Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06417 and H281DRAFT_06418 are separated by 325 nucleotides H281DRAFT_06418 and H281DRAFT_06419 overlap by 4 nucleotides H281DRAFT_06419 and H281DRAFT_06420 are separated by 464 nucleotides
H281DRAFT_06417: H281DRAFT_06417 - Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 family, at 16,756 to 17,805
_06417
H281DRAFT_06418: H281DRAFT_06418 - RES domain-containing protein, at 18,131 to 18,604
_06418
H281DRAFT_06419: H281DRAFT_06419 - putative toxin-antitoxin system antitoxin component, TIGR02293 family, at 18,601 to 19,029
_06419
H281DRAFT_06420: H281DRAFT_06420 - hypothetical protein, at 19,494 to 19,649
_06420
Position (kb) 18
19 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 17.181 kb on + strand, within H281DRAFT_06417 at 17.182 kb on - strand, within H281DRAFT_06417 at 17.255 kb on + strand, within H281DRAFT_06417 at 17.541 kb on - strand, within H281DRAFT_06417 at 17.541 kb on - strand, within H281DRAFT_06417 at 17.571 kb on + strand, within H281DRAFT_06417 at 17.676 kb on - strand, within H281DRAFT_06417 at 17.900 kb on + strand at 17.901 kb on - strand at 17.901 kb on - strand at 17.901 kb on - strand at 17.901 kb on - strand at 17.902 kb on + strand at 17.902 kb on + strand at 17.902 kb on + strand at 17.902 kb on + strand at 17.902 kb on + strand at 17.902 kb on + strand at 17.902 kb on + strand at 17.903 kb on - strand at 18.002 kb on + strand at 18.002 kb on + strand at 18.002 kb on + strand at 18.002 kb on + strand at 18.003 kb on - strand at 18.003 kb on - strand at 18.003 kb on - strand at 18.003 kb on - strand at 18.009 kb on + strand at 18.009 kb on + strand at 18.010 kb on - strand at 18.010 kb on - strand at 18.011 kb on + strand at 18.011 kb on + strand at 18.011 kb on + strand at 18.011 kb on + strand at 18.011 kb on + strand at 18.011 kb on + strand at 18.012 kb on - strand at 18.012 kb on - strand at 18.012 kb on - strand at 18.012 kb on - strand at 18.055 kb on - strand at 18.060 kb on - strand at 18.127 kb on + strand at 18.128 kb on - strand at 18.128 kb on - strand at 18.132 kb on + strand at 18.133 kb on - strand at 18.273 kb on - strand, within H281DRAFT_06418 at 18.273 kb on - strand, within H281DRAFT_06418 at 18.273 kb on - strand, within H281DRAFT_06418 at 18.437 kb on + strand, within H281DRAFT_06418 at 18.438 kb on - strand, within H281DRAFT_06418 at 18.502 kb on - strand, within H281DRAFT_06418 at 18.572 kb on - strand at 18.572 kb on - strand at 18.572 kb on - strand at 18.618 kb on - strand at 18.837 kb on - strand, within H281DRAFT_06419 at 19.044 kb on - strand at 19.177 kb on - strand at 19.177 kb on - strand at 19.177 kb on - strand at 19.177 kb on - strand at 19.177 kb on - strand at 19.177 kb on - strand at 19.200 kb on + strand at 19.215 kb on + strand at 19.215 kb on + strand at 19.216 kb on - strand at 19.235 kb on + strand at 19.235 kb on + strand at 19.235 kb on + strand at 19.235 kb on + strand at 19.288 kb on - strand at 19.288 kb on - strand at 19.316 kb on + strand at 19.316 kb on + strand at 19.316 kb on + strand at 19.316 kb on + strand at 19.316 kb on + strand at 19.316 kb on + strand at 19.316 kb on + strand at 19.316 kb on + strand at 19.317 kb on - strand at 19.317 kb on - strand at 19.317 kb on - strand at 19.317 kb on - strand at 19.434 kb on - strand at 19.434 kb on - strand at 19.500 kb on + strand at 19.500 kb on + strand at 19.501 kb on - strand at 19.501 kb on - strand at 19.501 kb on - strand at 19.505 kb on + strand at 19.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 17,181 + H281DRAFT_06417 0.40 +0.5 17,182 - H281DRAFT_06417 0.41 +0.7 17,255 + H281DRAFT_06417 0.48 -1.0 17,541 - H281DRAFT_06417 0.75 +0.1 17,541 - H281DRAFT_06417 0.75 -1.7 17,571 + H281DRAFT_06417 0.78 -0.6 17,676 - H281DRAFT_06417 0.88 -0.1 17,900 + -0.1 17,901 - -0.3 17,901 - -0.4 17,901 - -0.3 17,901 - -1.8 17,902 + -0.2 17,902 + -1.2 17,902 + -0.5 17,902 + -0.1 17,902 + +0.2 17,902 + -0.8 17,902 + -0.8 17,903 - +0.8 18,002 + -0.2 18,002 + -0.1 18,002 + -0.0 18,002 + +1.8 18,003 - +3.4 18,003 - -0.0 18,003 - -0.5 18,003 - +0.9 18,009 + +0.6 18,009 + +0.2 18,010 - -0.3 18,010 - +1.9 18,011 + +0.3 18,011 + +0.6 18,011 + +2.5 18,011 + +2.1 18,011 + +1.1 18,011 + +0.9 18,012 - -0.2 18,012 - -0.3 18,012 - -2.0 18,012 - +1.0 18,055 - -1.6 18,060 - +0.7 18,127 + -3.8 18,128 - -0.5 18,128 - +0.2 18,132 + -0.1 18,133 - +0.1 18,273 - H281DRAFT_06418 0.30 +0.5 18,273 - H281DRAFT_06418 0.30 -0.1 18,273 - H281DRAFT_06418 0.30 +0.3 18,437 + H281DRAFT_06418 0.65 -1.4 18,438 - H281DRAFT_06418 0.65 +0.3 18,502 - H281DRAFT_06418 0.78 +0.3 18,572 - -0.4 18,572 - +0.0 18,572 - +0.9 18,618 - +0.2 18,837 - H281DRAFT_06419 0.55 -0.8 19,044 - -1.5 19,177 - +0.2 19,177 - +0.6 19,177 - -0.1 19,177 - +0.1 19,177 - +0.2 19,177 - +1.6 19,200 + +0.1 19,215 + +0.4 19,215 + -0.3 19,216 - -1.9 19,235 + -0.1 19,235 + -0.9 19,235 + -0.2 19,235 + -1.4 19,288 - -0.5 19,288 - -0.1 19,316 + -0.1 19,316 + -0.3 19,316 + -0.2 19,316 + -0.2 19,316 + -1.0 19,316 + -1.5 19,316 + +0.2 19,316 + +0.6 19,317 - +0.3 19,317 - -0.3 19,317 - -3.3 19,317 - -1.3 19,434 - +0.3 19,434 - +0.5 19,500 + +0.5 19,500 + +0.8 19,501 - +0.0 19,501 - +0.2 19,501 - +0.4 19,505 + +0.5 19,505 + +0.3
Or see this region's nucleotide sequence