Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06374 and H281DRAFT_06375 are separated by 44 nucleotides H281DRAFT_06375 and H281DRAFT_06376 are separated by 231 nucleotides H281DRAFT_06376 and H281DRAFT_06377 are separated by 209 nucleotides
H281DRAFT_06374: H281DRAFT_06374 - ATP-binding cassette, subfamily B, at 46,382 to 48,211
_06374
H281DRAFT_06375: H281DRAFT_06375 - hypothetical protein, at 48,256 to 48,483
_06375
H281DRAFT_06376: H281DRAFT_06376 - transcriptional regulator, LysR family, at 48,715 to 49,611
_06376
H281DRAFT_06377: H281DRAFT_06377 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 49,821 to 50,570
_06377
Position (kb) 48
49
50 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 47.943 kb on + strand, within H281DRAFT_06374 at 47.943 kb on + strand, within H281DRAFT_06374 at 48.156 kb on - strand at 48.377 kb on + strand, within H281DRAFT_06375 at 48.378 kb on - strand, within H281DRAFT_06375 at 48.378 kb on - strand, within H281DRAFT_06375 at 49.129 kb on + strand, within H281DRAFT_06376 at 49.130 kb on - strand, within H281DRAFT_06376 at 49.378 kb on + strand, within H281DRAFT_06376 at 49.638 kb on - strand at 49.741 kb on + strand at 49.741 kb on + strand at 49.741 kb on + strand at 49.752 kb on + strand at 50.105 kb on - strand, within H281DRAFT_06377 at 50.114 kb on - strand, within H281DRAFT_06377 at 50.172 kb on + strand, within H281DRAFT_06377 at 50.173 kb on - strand, within H281DRAFT_06377 at 50.173 kb on - strand, within H281DRAFT_06377 at 50.175 kb on - strand, within H281DRAFT_06377 at 50.175 kb on - strand, within H281DRAFT_06377 at 50.189 kb on - strand, within H281DRAFT_06377
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 47,943 + H281DRAFT_06374 0.85 -0.6 47,943 + H281DRAFT_06374 0.85 +1.8 48,156 - +0.6 48,377 + H281DRAFT_06375 0.53 -3.1 48,378 - H281DRAFT_06375 0.54 -2.6 48,378 - H281DRAFT_06375 0.54 +0.4 49,129 + H281DRAFT_06376 0.46 +0.3 49,130 - H281DRAFT_06376 0.46 -0.3 49,378 + H281DRAFT_06376 0.74 -0.3 49,638 - +0.7 49,741 + -0.8 49,741 + +0.9 49,741 + -0.8 49,752 + +0.2 50,105 - H281DRAFT_06377 0.38 -0.3 50,114 - H281DRAFT_06377 0.39 +4.3 50,172 + H281DRAFT_06377 0.47 -1.2 50,173 - H281DRAFT_06377 0.47 +0.9 50,173 - H281DRAFT_06377 0.47 +0.7 50,175 - H281DRAFT_06377 0.47 -1.0 50,175 - H281DRAFT_06377 0.47 -0.2 50,189 - H281DRAFT_06377 0.49 +0.2
Or see this region's nucleotide sequence