Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06342 and H281DRAFT_06343 are separated by 53 nucleotides H281DRAFT_06343 and H281DRAFT_06344 are separated by 6 nucleotides
H281DRAFT_06342: H281DRAFT_06342 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 16,383 to 17,804
_06342
H281DRAFT_06343: H281DRAFT_06343 - transcriptional regulator, AsnC family, at 17,858 to 18,355
_06343
H281DRAFT_06344: H281DRAFT_06344 - transcriptional regulator, LysR family, at 18,362 to 19,285
_06344
Position (kb) 17
18
19 Strain fitness (log2 ratio) -1
0
1
2 at 16.936 kb on - strand, within H281DRAFT_06342 at 17.286 kb on + strand, within H281DRAFT_06342 at 17.341 kb on - strand, within H281DRAFT_06342 at 17.529 kb on - strand, within H281DRAFT_06342 at 17.803 kb on - strand at 17.803 kb on - strand at 17.846 kb on + strand at 17.847 kb on - strand at 18.012 kb on - strand, within H281DRAFT_06343 at 18.185 kb on + strand, within H281DRAFT_06343 at 18.282 kb on - strand, within H281DRAFT_06343 at 18.354 kb on - strand at 18.776 kb on + strand, within H281DRAFT_06344 at 18.776 kb on + strand, within H281DRAFT_06344 at 18.839 kb on - strand, within H281DRAFT_06344 at 18.986 kb on - strand at 18.986 kb on - strand, within H281DRAFT_06344 at 19.072 kb on + strand, within H281DRAFT_06344 at 19.176 kb on + strand, within H281DRAFT_06344 at 19.176 kb on + strand, within H281DRAFT_06344 at 19.177 kb on - strand, within H281DRAFT_06344
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 16,936 - H281DRAFT_06342 0.39 -0.0 17,286 + H281DRAFT_06342 0.64 +1.3 17,341 - H281DRAFT_06342 0.67 -0.7 17,529 - H281DRAFT_06342 0.81 -0.5 17,803 - +0.4 17,803 - -0.3 17,846 + +0.0 17,847 - -0.5 18,012 - H281DRAFT_06343 0.31 -0.3 18,185 + H281DRAFT_06343 0.66 -1.5 18,282 - H281DRAFT_06343 0.85 +0.6 18,354 - +2.4 18,776 + H281DRAFT_06344 0.45 -0.1 18,776 + H281DRAFT_06344 0.45 +0.4 18,839 - H281DRAFT_06344 0.52 -0.6 18,986 - +0.4 18,986 - H281DRAFT_06344 0.68 +0.8 19,072 + H281DRAFT_06344 0.77 -0.8 19,176 + H281DRAFT_06344 0.88 -0.0 19,176 + H281DRAFT_06344 0.88 +1.3 19,177 - H281DRAFT_06344 0.88 +0.8
Or see this region's nucleotide sequence