Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06290 and H281DRAFT_06291 overlap by 4 nucleotides H281DRAFT_06291 and H281DRAFT_06292 are separated by 59 nucleotides H281DRAFT_06292 and H281DRAFT_06293 are separated by 928 nucleotides
H281DRAFT_06290: H281DRAFT_06290 - exoribonuclease-2, at 71,822 to 73,960
_06290
H281DRAFT_06291: H281DRAFT_06291 - shikimate dehydrogenase (EC 1.1.1.25), at 73,957 to 74,820
_06291
H281DRAFT_06292: H281DRAFT_06292 - monofunctional biosynthetic peptidoglycan transglycosylase, at 74,880 to 75,602
_06292
H281DRAFT_06293: H281DRAFT_06293 - transcriptional regulator, IclR family, at 76,531 to 77,511
_06293
Position (kb) 74
75
76 Strain fitness (log2 ratio) -1
0
1
2 at 74.832 kb on + strand at 74.876 kb on + strand at 74.932 kb on - strand at 74.932 kb on - strand at 75.006 kb on + strand at 75.006 kb on + strand, within H281DRAFT_06292 at 75.006 kb on + strand, within H281DRAFT_06292 at 75.007 kb on - strand, within H281DRAFT_06292 at 75.030 kb on + strand, within H281DRAFT_06292 at 75.030 kb on + strand, within H281DRAFT_06292 at 75.031 kb on - strand, within H281DRAFT_06292 at 75.300 kb on + strand, within H281DRAFT_06292 at 75.300 kb on + strand, within H281DRAFT_06292 at 75.300 kb on + strand, within H281DRAFT_06292 at 75.300 kb on + strand, within H281DRAFT_06292 at 75.300 kb on + strand, within H281DRAFT_06292 at 75.301 kb on - strand, within H281DRAFT_06292 at 75.301 kb on - strand, within H281DRAFT_06292 at 75.302 kb on + strand, within H281DRAFT_06292 at 75.302 kb on + strand, within H281DRAFT_06292 at 75.302 kb on + strand, within H281DRAFT_06292 at 75.303 kb on - strand, within H281DRAFT_06292 at 75.303 kb on - strand, within H281DRAFT_06292 at 75.305 kb on - strand, within H281DRAFT_06292 at 75.305 kb on - strand, within H281DRAFT_06292 at 75.378 kb on + strand, within H281DRAFT_06292 at 75.439 kb on - strand, within H281DRAFT_06292 at 75.441 kb on + strand, within H281DRAFT_06292 at 75.442 kb on - strand, within H281DRAFT_06292 at 75.442 kb on - strand, within H281DRAFT_06292 at 75.540 kb on + strand at 75.541 kb on - strand at 75.600 kb on + strand at 75.665 kb on - strand at 75.756 kb on + strand at 75.757 kb on - strand at 75.757 kb on - strand at 75.879 kb on + strand at 75.880 kb on - strand at 75.880 kb on - strand at 75.995 kb on + strand at 75.995 kb on + strand at 76.005 kb on + strand at 76.006 kb on - strand at 76.020 kb on + strand at 76.021 kb on - strand at 76.021 kb on - strand at 76.021 kb on - strand at 76.037 kb on + strand at 76.037 kb on + strand at 76.038 kb on - strand at 76.038 kb on - strand at 76.038 kb on - strand at 76.122 kb on + strand at 76.122 kb on + strand at 76.123 kb on - strand at 76.123 kb on - strand at 76.129 kb on + strand at 76.130 kb on - strand at 76.184 kb on - strand at 76.184 kb on - strand at 76.350 kb on - strand at 76.350 kb on - strand at 76.423 kb on + strand at 76.424 kb on - strand at 76.424 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 74,832 + -0.0 74,876 + -0.5 74,932 - +0.5 74,932 - +0.4 75,006 + -1.3 75,006 + H281DRAFT_06292 0.17 -0.7 75,006 + H281DRAFT_06292 0.17 +0.6 75,007 - H281DRAFT_06292 0.18 +0.1 75,030 + H281DRAFT_06292 0.21 +0.7 75,030 + H281DRAFT_06292 0.21 +0.8 75,031 - H281DRAFT_06292 0.21 +1.1 75,300 + H281DRAFT_06292 0.58 +1.4 75,300 + H281DRAFT_06292 0.58 +0.1 75,300 + H281DRAFT_06292 0.58 +1.2 75,300 + H281DRAFT_06292 0.58 -0.1 75,300 + H281DRAFT_06292 0.58 -0.0 75,301 - H281DRAFT_06292 0.58 +0.1 75,301 - H281DRAFT_06292 0.58 +0.4 75,302 + H281DRAFT_06292 0.58 -0.0 75,302 + H281DRAFT_06292 0.58 +0.6 75,302 + H281DRAFT_06292 0.58 -1.2 75,303 - H281DRAFT_06292 0.59 +2.3 75,303 - H281DRAFT_06292 0.59 +1.8 75,305 - H281DRAFT_06292 0.59 +0.2 75,305 - H281DRAFT_06292 0.59 -0.3 75,378 + H281DRAFT_06292 0.69 +0.2 75,439 - H281DRAFT_06292 0.77 -0.3 75,441 + H281DRAFT_06292 0.78 -0.1 75,442 - H281DRAFT_06292 0.78 -0.3 75,442 - H281DRAFT_06292 0.78 +1.2 75,540 + +0.6 75,541 - -1.7 75,600 + -0.4 75,665 - +0.7 75,756 + +1.1 75,757 - -0.2 75,757 - +1.1 75,879 + -1.2 75,880 - +0.6 75,880 - +0.9 75,995 + -0.9 75,995 + +1.6 76,005 + -0.5 76,006 - -0.1 76,020 + +0.8 76,021 - -0.2 76,021 - +1.0 76,021 - -0.5 76,037 + -0.4 76,037 + -0.4 76,038 - -0.0 76,038 - +0.1 76,038 - +0.1 76,122 + -0.2 76,122 + -0.3 76,123 - -0.7 76,123 - +0.4 76,129 + +0.4 76,130 - -0.2 76,184 - +0.4 76,184 - +0.6 76,350 - -0.7 76,350 - -0.2 76,423 + +1.3 76,424 - -1.2 76,424 - -0.1
Or see this region's nucleotide sequence