Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06192 and H281DRAFT_06193 are separated by 412 nucleotides H281DRAFT_06193 and H281DRAFT_06194 are separated by 80 nucleotides H281DRAFT_06194 and H281DRAFT_06195 are separated by 276 nucleotides H281DRAFT_06195 and H281DRAFT_06196 are separated by 33 nucleotides
H281DRAFT_06192: H281DRAFT_06192 - hypothetical protein, at 81,002 to 81,835
_06192
H281DRAFT_06193: H281DRAFT_06193 - hypothetical protein, at 82,248 to 83,075
_06193
H281DRAFT_06194: H281DRAFT_06194 - Proteolipid membrane potential modulator, at 83,156 to 83,350
_06194
H281DRAFT_06195: H281DRAFT_06195 - hypothetical protein, at 83,627 to 83,890
_06195
H281DRAFT_06196: H281DRAFT_06196 - ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module, at 83,924 to 85,891
_06196
Position (kb) 82
83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 81.364 kb on + strand, within H281DRAFT_06192 at 81.364 kb on + strand, within H281DRAFT_06192 at 81.364 kb on + strand, within H281DRAFT_06192 at 81.364 kb on + strand, within H281DRAFT_06192 at 81.365 kb on - strand, within H281DRAFT_06192 at 81.365 kb on - strand, within H281DRAFT_06192 at 81.365 kb on - strand, within H281DRAFT_06192 at 81.409 kb on - strand, within H281DRAFT_06192 at 81.409 kb on - strand, within H281DRAFT_06192 at 81.409 kb on - strand, within H281DRAFT_06192 at 81.409 kb on - strand, within H281DRAFT_06192 at 81.426 kb on - strand, within H281DRAFT_06192 at 81.498 kb on + strand, within H281DRAFT_06192 at 81.498 kb on + strand, within H281DRAFT_06192 at 81.498 kb on + strand, within H281DRAFT_06192 at 81.498 kb on + strand, within H281DRAFT_06192 at 81.498 kb on + strand, within H281DRAFT_06192 at 81.498 kb on + strand, within H281DRAFT_06192 at 81.498 kb on + strand, within H281DRAFT_06192 at 81.498 kb on + strand, within H281DRAFT_06192 at 81.498 kb on + strand, within H281DRAFT_06192 at 81.498 kb on + strand, within H281DRAFT_06192 at 81.499 kb on - strand, within H281DRAFT_06192 at 81.499 kb on - strand, within H281DRAFT_06192 at 81.499 kb on - strand, within H281DRAFT_06192 at 81.499 kb on - strand, within H281DRAFT_06192 at 81.499 kb on - strand, within H281DRAFT_06192 at 81.501 kb on + strand, within H281DRAFT_06192 at 81.501 kb on + strand, within H281DRAFT_06192 at 81.525 kb on + strand, within H281DRAFT_06192 at 81.525 kb on + strand, within H281DRAFT_06192 at 81.526 kb on - strand, within H281DRAFT_06192 at 81.532 kb on + strand, within H281DRAFT_06192 at 81.591 kb on - strand, within H281DRAFT_06192 at 81.700 kb on + strand, within H281DRAFT_06192 at 81.700 kb on + strand, within H281DRAFT_06192 at 81.700 kb on + strand, within H281DRAFT_06192 at 81.700 kb on + strand, within H281DRAFT_06192 at 81.700 kb on + strand, within H281DRAFT_06192 at 81.701 kb on - strand, within H281DRAFT_06192 at 81.701 kb on - strand, within H281DRAFT_06192 at 81.701 kb on - strand, within H281DRAFT_06192 at 81.702 kb on + strand, within H281DRAFT_06192 at 81.702 kb on + strand, within H281DRAFT_06192 at 81.703 kb on - strand, within H281DRAFT_06192 at 81.703 kb on - strand, within H281DRAFT_06192 at 81.837 kb on + strand at 81.838 kb on - strand at 81.958 kb on - strand at 81.975 kb on + strand at 81.975 kb on + strand at 81.976 kb on - strand at 81.992 kb on + strand at 82.007 kb on + strand at 82.008 kb on - strand at 82.039 kb on + strand at 82.039 kb on + strand at 82.105 kb on + strand at 82.105 kb on + strand at 82.116 kb on + strand at 82.318 kb on + strand at 82.332 kb on + strand, within H281DRAFT_06193 at 82.333 kb on - strand, within H281DRAFT_06193 at 82.389 kb on - strand, within H281DRAFT_06193 at 82.514 kb on + strand, within H281DRAFT_06193 at 82.515 kb on - strand, within H281DRAFT_06193 at 82.580 kb on + strand, within H281DRAFT_06193 at 82.708 kb on + strand, within H281DRAFT_06193 at 82.708 kb on + strand, within H281DRAFT_06193 at 82.708 kb on + strand, within H281DRAFT_06193 at 82.709 kb on - strand, within H281DRAFT_06193 at 82.709 kb on - strand, within H281DRAFT_06193 at 82.709 kb on - strand, within H281DRAFT_06193 at 82.754 kb on + strand, within H281DRAFT_06193 at 82.754 kb on + strand, within H281DRAFT_06193 at 82.754 kb on + strand, within H281DRAFT_06193 at 82.755 kb on - strand, within H281DRAFT_06193 at 82.755 kb on - strand, within H281DRAFT_06193 at 83.097 kb on + strand at 83.097 kb on + strand at 83.097 kb on + strand at 83.108 kb on + strand at 83.108 kb on + strand at 83.108 kb on + strand at 83.202 kb on + strand, within H281DRAFT_06194 at 83.211 kb on - strand, within H281DRAFT_06194 at 83.253 kb on - strand, within H281DRAFT_06194 at 83.342 kb on + strand at 83.343 kb on - strand at 83.354 kb on + strand at 83.377 kb on - strand at 83.407 kb on - strand at 83.409 kb on + strand at 83.409 kb on + strand at 83.409 kb on + strand at 83.523 kb on - strand at 83.523 kb on - strand at 83.591 kb on + strand at 83.592 kb on - strand at 83.598 kb on + strand at 83.804 kb on + strand, within H281DRAFT_06195 at 83.804 kb on + strand, within H281DRAFT_06195 at 83.805 kb on - strand, within H281DRAFT_06195 at 83.805 kb on - strand, within H281DRAFT_06195 at 83.805 kb on - strand, within H281DRAFT_06195 at 83.806 kb on + strand, within H281DRAFT_06195 at 83.807 kb on - strand, within H281DRAFT_06195 at 83.807 kb on - strand, within H281DRAFT_06195 at 83.860 kb on - strand, within H281DRAFT_06195 at 84.059 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 81,364 + H281DRAFT_06192 0.43 +0.1 81,364 + H281DRAFT_06192 0.43 -0.4 81,364 + H281DRAFT_06192 0.43 +0.8 81,364 + H281DRAFT_06192 0.43 +0.5 81,365 - H281DRAFT_06192 0.44 -0.3 81,365 - H281DRAFT_06192 0.44 +1.6 81,365 - H281DRAFT_06192 0.44 +0.4 81,409 - H281DRAFT_06192 0.49 +0.8 81,409 - H281DRAFT_06192 0.49 -1.5 81,409 - H281DRAFT_06192 0.49 +3.9 81,409 - H281DRAFT_06192 0.49 +0.6 81,426 - H281DRAFT_06192 0.51 +0.1 81,498 + H281DRAFT_06192 0.59 +0.9 81,498 + H281DRAFT_06192 0.59 +0.0 81,498 + H281DRAFT_06192 0.59 +0.3 81,498 + H281DRAFT_06192 0.59 +0.8 81,498 + H281DRAFT_06192 0.59 -0.3 81,498 + H281DRAFT_06192 0.59 +0.6 81,498 + H281DRAFT_06192 0.59 +0.3 81,498 + H281DRAFT_06192 0.59 -0.1 81,498 + H281DRAFT_06192 0.59 +0.1 81,498 + H281DRAFT_06192 0.59 -0.7 81,499 - H281DRAFT_06192 0.60 +0.3 81,499 - H281DRAFT_06192 0.60 -0.8 81,499 - H281DRAFT_06192 0.60 -0.5 81,499 - H281DRAFT_06192 0.60 +0.6 81,499 - H281DRAFT_06192 0.60 -2.1 81,501 + H281DRAFT_06192 0.60 -1.4 81,501 + H281DRAFT_06192 0.60 +0.2 81,525 + H281DRAFT_06192 0.63 +1.0 81,525 + H281DRAFT_06192 0.63 +0.2 81,526 - H281DRAFT_06192 0.63 +0.3 81,532 + H281DRAFT_06192 0.64 -0.5 81,591 - H281DRAFT_06192 0.71 -0.0 81,700 + H281DRAFT_06192 0.84 -1.5 81,700 + H281DRAFT_06192 0.84 +0.1 81,700 + H281DRAFT_06192 0.84 +0.1 81,700 + H281DRAFT_06192 0.84 -0.8 81,700 + H281DRAFT_06192 0.84 -1.2 81,701 - H281DRAFT_06192 0.84 -0.6 81,701 - H281DRAFT_06192 0.84 +0.2 81,701 - H281DRAFT_06192 0.84 -0.4 81,702 + H281DRAFT_06192 0.84 -0.5 81,702 + H281DRAFT_06192 0.84 +0.2 81,703 - H281DRAFT_06192 0.84 +2.0 81,703 - H281DRAFT_06192 0.84 +2.3 81,837 + -1.6 81,838 - -0.3 81,958 - +0.9 81,975 + -0.8 81,975 + +0.1 81,976 - +0.7 81,992 + +0.5 82,007 + -0.0 82,008 - +1.4 82,039 + -0.3 82,039 + -0.3 82,105 + -3.2 82,105 + +0.5 82,116 + +0.1 82,318 + -0.3 82,332 + H281DRAFT_06193 0.10 +0.4 82,333 - H281DRAFT_06193 0.10 +1.4 82,389 - H281DRAFT_06193 0.17 +0.9 82,514 + H281DRAFT_06193 0.32 +1.1 82,515 - H281DRAFT_06193 0.32 -0.1 82,580 + H281DRAFT_06193 0.40 +0.9 82,708 + H281DRAFT_06193 0.56 +0.3 82,708 + H281DRAFT_06193 0.56 -0.2 82,708 + H281DRAFT_06193 0.56 -0.1 82,709 - H281DRAFT_06193 0.56 +1.9 82,709 - H281DRAFT_06193 0.56 -0.7 82,709 - H281DRAFT_06193 0.56 +1.0 82,754 + H281DRAFT_06193 0.61 +1.3 82,754 + H281DRAFT_06193 0.61 +1.4 82,754 + H281DRAFT_06193 0.61 +0.2 82,755 - H281DRAFT_06193 0.61 +0.8 82,755 - H281DRAFT_06193 0.61 +1.0 83,097 + +0.3 83,097 + -1.0 83,097 + +0.4 83,108 + +0.6 83,108 + -0.0 83,108 + -0.7 83,202 + H281DRAFT_06194 0.24 +0.0 83,211 - H281DRAFT_06194 0.28 +1.2 83,253 - H281DRAFT_06194 0.50 +0.9 83,342 + +0.1 83,343 - -1.7 83,354 + -1.4 83,377 - +0.7 83,407 - -0.3 83,409 + +0.5 83,409 + +0.4 83,409 + +0.2 83,523 - +1.8 83,523 - -0.2 83,591 + +0.9 83,592 - +0.9 83,598 + +0.4 83,804 + H281DRAFT_06195 0.67 +0.7 83,804 + H281DRAFT_06195 0.67 +1.9 83,805 - H281DRAFT_06195 0.67 -0.8 83,805 - H281DRAFT_06195 0.67 -1.4 83,805 - H281DRAFT_06195 0.67 -0.0 83,806 + H281DRAFT_06195 0.68 -0.9 83,807 - H281DRAFT_06195 0.68 -0.7 83,807 - H281DRAFT_06195 0.68 +0.5 83,860 - H281DRAFT_06195 0.88 +1.3 84,059 + +0.3
Or see this region's nucleotide sequence