Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06084 and H281DRAFT_06085 are separated by 446 nucleotides H281DRAFT_06085 and H281DRAFT_06086 are separated by 115 nucleotides
H281DRAFT_06084: H281DRAFT_06084 - Uncharacterized membrane protein HdeD, DUF308 family, at 102,265 to 102,840
_06084
H281DRAFT_06085: H281DRAFT_06085 - transcriptional regulator, AraC family, at 103,287 to 104,114
_06085
H281DRAFT_06086: H281DRAFT_06086 - Osmotically-inducible protein OsmY, contains BON domain, at 104,230 to 104,883
_06086
Position (kb) 103
104
105 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 102.521 kb on - strand, within H281DRAFT_06084 at 102.570 kb on + strand, within H281DRAFT_06084 at 102.570 kb on + strand, within H281DRAFT_06084 at 102.571 kb on - strand, within H281DRAFT_06084 at 102.574 kb on - strand, within H281DRAFT_06084 at 102.737 kb on - strand, within H281DRAFT_06084 at 102.830 kb on - strand at 103.045 kb on - strand at 103.249 kb on + strand at 103.249 kb on + strand at 103.250 kb on - strand at 103.300 kb on + strand at 103.301 kb on - strand at 103.554 kb on - strand, within H281DRAFT_06085 at 103.778 kb on + strand, within H281DRAFT_06085 at 103.779 kb on - strand, within H281DRAFT_06085 at 103.933 kb on - strand, within H281DRAFT_06085 at 104.048 kb on - strand at 104.055 kb on - strand at 104.058 kb on + strand at 104.058 kb on + strand at 104.058 kb on + strand at 104.058 kb on + strand at 104.059 kb on - strand at 104.059 kb on - strand at 104.059 kb on - strand at 104.059 kb on - strand at 104.060 kb on + strand at 104.153 kb on - strand at 104.194 kb on - strand at 104.214 kb on - strand at 104.287 kb on + strand at 104.288 kb on - strand at 104.503 kb on - strand, within H281DRAFT_06086
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 102,521 - H281DRAFT_06084 0.44 +0.2 102,570 + H281DRAFT_06084 0.53 +0.7 102,570 + H281DRAFT_06084 0.53 +0.4 102,571 - H281DRAFT_06084 0.53 -0.3 102,574 - H281DRAFT_06084 0.54 +3.4 102,737 - H281DRAFT_06084 0.82 -0.3 102,830 - -1.2 103,045 - -0.7 103,249 + -0.1 103,249 + -0.5 103,250 - +0.2 103,300 + +0.7 103,301 - -0.9 103,554 - H281DRAFT_06085 0.32 +1.3 103,778 + H281DRAFT_06085 0.59 -0.3 103,779 - H281DRAFT_06085 0.59 -0.4 103,933 - H281DRAFT_06085 0.78 -0.8 104,048 - +1.7 104,055 - +0.8 104,058 + +0.5 104,058 + +0.3 104,058 + +2.6 104,058 + +0.7 104,059 - +0.8 104,059 - +0.9 104,059 - +0.4 104,059 - -1.4 104,060 + +0.6 104,153 - +0.2 104,194 - -0.4 104,214 - +0.3 104,287 + +0.4 104,288 - -0.1 104,503 - H281DRAFT_06086 0.42 +3.8
Or see this region's nucleotide sequence