Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06013 and H281DRAFT_06014 are separated by 88 nucleotides H281DRAFT_06014 and H281DRAFT_06015 are separated by 343 nucleotides
H281DRAFT_06013: H281DRAFT_06013 - O-sialoglycoprotein endopeptidase, at 15,733 to 16,761
_06013
H281DRAFT_06014: H281DRAFT_06014 - GTP cyclohydrolase I, at 16,850 to 17,656
_06014
H281DRAFT_06015: H281DRAFT_06015 - 1-deoxy-D-xylulose-5-phosphate synthase, at 18,000 to 19,907
_06015
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.885 kb on - strand at 16.932 kb on + strand, within H281DRAFT_06014 at 16.932 kb on + strand, within H281DRAFT_06014 at 16.932 kb on + strand, within H281DRAFT_06014 at 16.932 kb on + strand, within H281DRAFT_06014 at 16.932 kb on + strand, within H281DRAFT_06014 at 16.933 kb on - strand, within H281DRAFT_06014 at 16.933 kb on - strand, within H281DRAFT_06014 at 16.933 kb on - strand, within H281DRAFT_06014 at 17.010 kb on + strand, within H281DRAFT_06014 at 17.248 kb on + strand, within H281DRAFT_06014 at 17.278 kb on - strand, within H281DRAFT_06014 at 17.278 kb on - strand, within H281DRAFT_06014 at 17.328 kb on + strand, within H281DRAFT_06014 at 17.458 kb on + strand, within H281DRAFT_06014 at 17.458 kb on + strand, within H281DRAFT_06014 at 17.458 kb on + strand, within H281DRAFT_06014 at 17.458 kb on + strand, within H281DRAFT_06014 at 17.458 kb on + strand, within H281DRAFT_06014 at 17.458 kb on + strand, within H281DRAFT_06014 at 17.459 kb on - strand, within H281DRAFT_06014 at 17.459 kb on - strand, within H281DRAFT_06014 at 17.459 kb on - strand, within H281DRAFT_06014 at 17.459 kb on - strand, within H281DRAFT_06014 at 17.459 kb on - strand, within H281DRAFT_06014 at 17.459 kb on - strand, within H281DRAFT_06014 at 17.711 kb on + strand at 17.712 kb on - strand at 17.743 kb on + strand at 17.892 kb on + strand at 17.892 kb on + strand at 17.893 kb on - strand at 17.921 kb on + strand at 17.987 kb on + strand at 17.988 kb on - strand at 17.988 kb on - strand at 17.988 kb on - strand at 17.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 16,885 - -0.1 16,932 + H281DRAFT_06014 0.10 +1.8 16,932 + H281DRAFT_06014 0.10 +0.3 16,932 + H281DRAFT_06014 0.10 -0.1 16,932 + H281DRAFT_06014 0.10 +0.8 16,932 + H281DRAFT_06014 0.10 +0.4 16,933 - H281DRAFT_06014 0.10 -0.5 16,933 - H281DRAFT_06014 0.10 +0.4 16,933 - H281DRAFT_06014 0.10 +0.7 17,010 + H281DRAFT_06014 0.20 -1.4 17,248 + H281DRAFT_06014 0.49 -1.1 17,278 - H281DRAFT_06014 0.53 -0.1 17,278 - H281DRAFT_06014 0.53 -1.9 17,328 + H281DRAFT_06014 0.59 +1.4 17,458 + H281DRAFT_06014 0.75 -0.1 17,458 + H281DRAFT_06014 0.75 +0.2 17,458 + H281DRAFT_06014 0.75 +0.0 17,458 + H281DRAFT_06014 0.75 -1.0 17,458 + H281DRAFT_06014 0.75 -0.6 17,458 + H281DRAFT_06014 0.75 +0.4 17,459 - H281DRAFT_06014 0.75 -1.1 17,459 - H281DRAFT_06014 0.75 -0.8 17,459 - H281DRAFT_06014 0.75 +1.0 17,459 - H281DRAFT_06014 0.75 -0.9 17,459 - H281DRAFT_06014 0.75 -1.2 17,459 - H281DRAFT_06014 0.75 +0.5 17,711 + -0.1 17,712 - +0.6 17,743 + +0.8 17,892 + -1.8 17,892 + +0.2 17,893 - +0.6 17,921 + -0.1 17,987 + +0.8 17,988 - +0.5 17,988 - +0.4 17,988 - +0.0 17,988 - -0.3
Or see this region's nucleotide sequence