Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05952 and H281DRAFT_05953 are separated by 150 nucleotides H281DRAFT_05953 and H281DRAFT_05954 are separated by 2 nucleotides
H281DRAFT_05952: H281DRAFT_05952 - transcriptional regulator, LysR family, at 92,141 to 93,082
_05952
H281DRAFT_05953: H281DRAFT_05953 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 93,233 to 94,165
_05953
H281DRAFT_05954: H281DRAFT_05954 - Sugar phosphate permease, at 94,168 to 95,490
_05954
Position (kb) 93
94
95 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 92.717 kb on + strand, within H281DRAFT_05952 at 92.717 kb on + strand, within H281DRAFT_05952 at 92.812 kb on + strand, within H281DRAFT_05952 at 93.256 kb on + strand at 93.574 kb on + strand, within H281DRAFT_05953 at 93.658 kb on + strand, within H281DRAFT_05953 at 93.877 kb on - strand, within H281DRAFT_05953 at 94.003 kb on - strand, within H281DRAFT_05953 at 94.314 kb on - strand, within H281DRAFT_05954 at 94.390 kb on - strand, within H281DRAFT_05954 at 94.541 kb on - strand, within H281DRAFT_05954 at 94.541 kb on - strand, within H281DRAFT_05954 at 94.590 kb on - strand, within H281DRAFT_05954 at 94.748 kb on + strand, within H281DRAFT_05954 at 95.150 kb on + strand, within H281DRAFT_05954
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 92,717 + H281DRAFT_05952 0.61 +0.0 92,717 + H281DRAFT_05952 0.61 -0.2 92,812 + H281DRAFT_05952 0.71 -0.2 93,256 + +0.6 93,574 + H281DRAFT_05953 0.37 +3.6 93,658 + H281DRAFT_05953 0.46 +1.3 93,877 - H281DRAFT_05953 0.69 -0.2 94,003 - H281DRAFT_05953 0.83 +0.6 94,314 - H281DRAFT_05954 0.11 -2.1 94,390 - H281DRAFT_05954 0.17 -0.3 94,541 - H281DRAFT_05954 0.28 +0.3 94,541 - H281DRAFT_05954 0.28 -0.2 94,590 - H281DRAFT_05954 0.32 -0.2 94,748 + H281DRAFT_05954 0.44 +0.6 95,150 + H281DRAFT_05954 0.74 -0.5
Or see this region's nucleotide sequence