Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05854 and H281DRAFT_05855 are separated by 1 nucleotides H281DRAFT_05855 and H281DRAFT_05856 are separated by 16 nucleotides H281DRAFT_05856 and H281DRAFT_05857 are separated by 8 nucleotides
H281DRAFT_05854: H281DRAFT_05854 - ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE, at 133,981 to 135,069
_05854
H281DRAFT_05855: H281DRAFT_05855 - ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD, at 135,071 to 135,622
_05855
H281DRAFT_05856: H281DRAFT_05856 - ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC, at 135,639 to 136,442
_05856
H281DRAFT_05857: H281DRAFT_05857 - ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB, at 136,451 to 136,735
_05857
Position (kb) 135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 134.079 kb on - strand at 134.079 kb on - strand at 134.528 kb on + strand, within H281DRAFT_05854 at 134.708 kb on + strand, within H281DRAFT_05854 at 134.708 kb on + strand, within H281DRAFT_05854 at 134.709 kb on - strand, within H281DRAFT_05854 at 134.895 kb on - strand, within H281DRAFT_05854 at 135.070 kb on - strand at 135.075 kb on + strand at 135.087 kb on + strand at 135.088 kb on - strand at 135.120 kb on + strand at 135.240 kb on - strand, within H281DRAFT_05855 at 135.372 kb on + strand, within H281DRAFT_05855 at 135.447 kb on + strand, within H281DRAFT_05855 at 135.447 kb on + strand, within H281DRAFT_05855 at 135.607 kb on + strand at 135.638 kb on - strand at 135.840 kb on + strand, within H281DRAFT_05856 at 135.841 kb on - strand, within H281DRAFT_05856 at 135.893 kb on - strand, within H281DRAFT_05856 at 135.905 kb on - strand, within H281DRAFT_05856 at 135.905 kb on - strand, within H281DRAFT_05856 at 135.905 kb on - strand, within H281DRAFT_05856 at 135.991 kb on + strand, within H281DRAFT_05856 at 136.180 kb on + strand, within H281DRAFT_05856 at 136.180 kb on + strand, within H281DRAFT_05856 at 136.180 kb on + strand at 136.181 kb on - strand, within H281DRAFT_05856 at 136.211 kb on - strand, within H281DRAFT_05856 at 136.275 kb on - strand, within H281DRAFT_05856 at 136.415 kb on - strand at 136.415 kb on - strand at 136.415 kb on - strand at 136.452 kb on + strand at 136.452 kb on + strand at 136.452 kb on + strand at 136.482 kb on + strand, within H281DRAFT_05857 at 136.483 kb on - strand, within H281DRAFT_05857 at 136.500 kb on + strand, within H281DRAFT_05857 at 136.501 kb on - strand, within H281DRAFT_05857 at 136.612 kb on - strand, within H281DRAFT_05857
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 134,079 - -0.3 134,079 - -0.0 134,528 + H281DRAFT_05854 0.50 -0.9 134,708 + H281DRAFT_05854 0.67 -0.3 134,708 + H281DRAFT_05854 0.67 -0.3 134,709 - H281DRAFT_05854 0.67 +0.2 134,895 - H281DRAFT_05854 0.84 -1.1 135,070 - -0.3 135,075 + +0.2 135,087 + +3.6 135,088 - -1.7 135,120 + -0.5 135,240 - H281DRAFT_05855 0.31 +0.1 135,372 + H281DRAFT_05855 0.55 -0.5 135,447 + H281DRAFT_05855 0.68 -0.1 135,447 + H281DRAFT_05855 0.68 -1.4 135,607 + -0.8 135,638 - +1.3 135,840 + H281DRAFT_05856 0.25 -0.9 135,841 - H281DRAFT_05856 0.25 +2.1 135,893 - H281DRAFT_05856 0.32 -2.8 135,905 - H281DRAFT_05856 0.33 +0.1 135,905 - H281DRAFT_05856 0.33 -0.4 135,905 - H281DRAFT_05856 0.33 -0.9 135,991 + H281DRAFT_05856 0.44 -1.0 136,180 + H281DRAFT_05856 0.67 -2.2 136,180 + H281DRAFT_05856 0.67 -2.7 136,180 + +0.1 136,181 - H281DRAFT_05856 0.67 -0.3 136,211 - H281DRAFT_05856 0.71 -2.5 136,275 - H281DRAFT_05856 0.79 +0.5 136,415 - +0.3 136,415 - -0.1 136,415 - -0.7 136,452 + -0.8 136,452 + +0.6 136,452 + +3.1 136,482 + H281DRAFT_05857 0.11 +0.6 136,483 - H281DRAFT_05857 0.11 +0.8 136,500 + H281DRAFT_05857 0.17 +0.4 136,501 - H281DRAFT_05857 0.18 +1.1 136,612 - H281DRAFT_05857 0.56 -1.3
Or see this region's nucleotide sequence