Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05826 and H281DRAFT_05827 are separated by 140 nucleotides H281DRAFT_05827 and H281DRAFT_05828 are separated by 294 nucleotides
H281DRAFT_05826: H281DRAFT_05826 - glutamine--fructose-6-phosphate transaminase, at 102,463 to 104,280
_05826
H281DRAFT_05827: H281DRAFT_05827 - hypothetical protein, at 104,421 to 104,681
_05827
H281DRAFT_05828: H281DRAFT_05828 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 104,976 to 105,659
_05828
Position (kb) 104
105 Strain fitness (log2 ratio) -2
-1
0
1
2 at 104.278 kb on + strand at 104.278 kb on + strand at 104.279 kb on - strand at 104.307 kb on + strand at 104.307 kb on + strand at 104.308 kb on - strand at 104.308 kb on - strand at 104.308 kb on - strand at 104.308 kb on - strand at 104.317 kb on + strand at 104.318 kb on - strand at 104.318 kb on - strand at 104.342 kb on + strand at 104.342 kb on + strand at 104.343 kb on - strand at 104.343 kb on - strand at 104.343 kb on - strand at 104.343 kb on - strand at 104.345 kb on - strand at 104.345 kb on - strand at 104.345 kb on - strand at 104.347 kb on - strand at 104.347 kb on - strand at 104.468 kb on - strand, within H281DRAFT_05827 at 104.577 kb on + strand, within H281DRAFT_05827 at 104.622 kb on + strand, within H281DRAFT_05827 at 104.623 kb on - strand, within H281DRAFT_05827 at 104.623 kb on - strand, within H281DRAFT_05827 at 104.663 kb on + strand at 104.663 kb on + strand at 104.664 kb on - strand at 104.705 kb on + strand at 104.884 kb on + strand at 104.884 kb on + strand at 104.884 kb on + strand at 104.885 kb on - strand at 104.885 kb on - strand at 104.921 kb on - strand at 104.926 kb on + strand at 104.972 kb on + strand at 104.974 kb on + strand at 105.000 kb on + strand at 105.000 kb on + strand at 105.000 kb on + strand at 105.000 kb on + strand at 105.000 kb on + strand at 105.001 kb on - strand at 105.001 kb on - strand at 105.017 kb on - strand at 105.027 kb on + strand at 105.093 kb on + strand at 105.140 kb on - strand, within H281DRAFT_05828 at 105.172 kb on - strand, within H281DRAFT_05828 at 105.366 kb on + strand, within H281DRAFT_05828 at 105.366 kb on + strand, within H281DRAFT_05828 at 105.366 kb on + strand, within H281DRAFT_05828 at 105.366 kb on + strand, within H281DRAFT_05828 at 105.367 kb on - strand, within H281DRAFT_05828 at 105.411 kb on + strand, within H281DRAFT_05828 at 105.411 kb on + strand, within H281DRAFT_05828 at 105.429 kb on + strand, within H281DRAFT_05828 at 105.429 kb on + strand, within H281DRAFT_05828
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 104,278 + -0.4 104,278 + -0.8 104,279 - -0.2 104,307 + -0.5 104,307 + +0.1 104,308 - +0.7 104,308 - -0.4 104,308 - +0.7 104,308 - -0.0 104,317 + +0.1 104,318 - -0.6 104,318 - +1.2 104,342 + -0.5 104,342 + -0.2 104,343 - +0.3 104,343 - -0.3 104,343 - +0.1 104,343 - -0.7 104,345 - +0.7 104,345 - -1.0 104,345 - +0.6 104,347 - -1.3 104,347 - +0.2 104,468 - H281DRAFT_05827 0.18 +0.6 104,577 + H281DRAFT_05827 0.60 +0.8 104,622 + H281DRAFT_05827 0.77 -0.1 104,623 - H281DRAFT_05827 0.77 -0.4 104,623 - H281DRAFT_05827 0.77 -1.7 104,663 + +0.0 104,663 + -0.0 104,664 - -1.4 104,705 + +0.3 104,884 + -1.1 104,884 + +0.2 104,884 + +0.3 104,885 - -0.6 104,885 - -2.0 104,921 - -0.9 104,926 + +0.1 104,972 + +0.4 104,974 + +0.6 105,000 + -1.3 105,000 + -0.3 105,000 + -0.4 105,000 + +0.3 105,000 + +0.6 105,001 - -0.4 105,001 - +0.7 105,017 - +0.6 105,027 + +0.7 105,093 + +2.6 105,140 - H281DRAFT_05828 0.24 +0.3 105,172 - H281DRAFT_05828 0.29 +0.1 105,366 + H281DRAFT_05828 0.57 -1.9 105,366 + H281DRAFT_05828 0.57 -0.0 105,366 + H281DRAFT_05828 0.57 -0.0 105,366 + H281DRAFT_05828 0.57 +0.8 105,367 - H281DRAFT_05828 0.57 +0.5 105,411 + H281DRAFT_05828 0.64 +0.5 105,411 + H281DRAFT_05828 0.64 +0.1 105,429 + H281DRAFT_05828 0.66 -0.5 105,429 + H281DRAFT_05828 0.66 -0.5
Or see this region's nucleotide sequence