Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05770 and H281DRAFT_05771 are separated by 344 nucleotides H281DRAFT_05771 and H281DRAFT_05772 are separated by 175 nucleotides
H281DRAFT_05770: H281DRAFT_05770 - flagellar protein FlgJ, at 43,200 to 44,204
_05770
H281DRAFT_05771: H281DRAFT_05771 - c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains, at 44,549 to 45,337
_05771
H281DRAFT_05772: H281DRAFT_05772 - flagellar hook-associated protein 1 FlgK, at 45,513 to 47,486
_05772
Position (kb) 44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 43.974 kb on + strand, within H281DRAFT_05770 at 43.975 kb on - strand, within H281DRAFT_05770 at 44.029 kb on - strand, within H281DRAFT_05770 at 44.049 kb on + strand, within H281DRAFT_05770 at 44.163 kb on + strand at 44.280 kb on - strand at 44.280 kb on - strand at 44.397 kb on + strand at 44.422 kb on + strand at 44.431 kb on + strand at 44.951 kb on + strand, within H281DRAFT_05771 at 44.951 kb on + strand, within H281DRAFT_05771 at 44.952 kb on - strand, within H281DRAFT_05771 at 44.954 kb on + strand, within H281DRAFT_05771 at 44.954 kb on + strand, within H281DRAFT_05771 at 44.955 kb on - strand, within H281DRAFT_05771 at 44.955 kb on - strand, within H281DRAFT_05771 at 44.955 kb on - strand, within H281DRAFT_05771 at 44.972 kb on + strand, within H281DRAFT_05771 at 44.972 kb on + strand, within H281DRAFT_05771 at 44.973 kb on - strand, within H281DRAFT_05771 at 44.973 kb on - strand, within H281DRAFT_05771 at 45.005 kb on + strand, within H281DRAFT_05771 at 45.005 kb on + strand, within H281DRAFT_05771 at 45.456 kb on - strand at 45.462 kb on + strand at 45.462 kb on + strand at 45.462 kb on + strand at 45.463 kb on - strand at 45.615 kb on - strand at 45.615 kb on - strand at 45.655 kb on - strand at 45.655 kb on - strand at 45.655 kb on - strand at 45.711 kb on + strand, within H281DRAFT_05772 at 45.720 kb on + strand, within H281DRAFT_05772 at 45.720 kb on + strand, within H281DRAFT_05772 at 45.720 kb on + strand, within H281DRAFT_05772 at 45.741 kb on - strand, within H281DRAFT_05772 at 45.774 kb on + strand, within H281DRAFT_05772 at 45.849 kb on + strand, within H281DRAFT_05772 at 45.850 kb on - strand, within H281DRAFT_05772 at 45.896 kb on + strand, within H281DRAFT_05772 at 45.963 kb on + strand, within H281DRAFT_05772 at 46.027 kb on - strand, within H281DRAFT_05772 at 46.176 kb on + strand, within H281DRAFT_05772 at 46.176 kb on + strand, within H281DRAFT_05772 at 46.281 kb on + strand, within H281DRAFT_05772 at 46.282 kb on - strand, within H281DRAFT_05772
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 43,974 + H281DRAFT_05770 0.77 -0.4 43,975 - H281DRAFT_05770 0.77 +1.0 44,029 - H281DRAFT_05770 0.82 +1.1 44,049 + H281DRAFT_05770 0.84 +1.1 44,163 + +1.5 44,280 - +0.3 44,280 - -0.4 44,397 + -0.5 44,422 + +0.0 44,431 + -0.4 44,951 + H281DRAFT_05771 0.51 +0.1 44,951 + H281DRAFT_05771 0.51 -0.3 44,952 - H281DRAFT_05771 0.51 -0.5 44,954 + H281DRAFT_05771 0.51 +1.2 44,954 + H281DRAFT_05771 0.51 -0.5 44,955 - H281DRAFT_05771 0.51 +1.3 44,955 - H281DRAFT_05771 0.51 +0.4 44,955 - H281DRAFT_05771 0.51 -0.1 44,972 + H281DRAFT_05771 0.54 +0.1 44,972 + H281DRAFT_05771 0.54 +0.0 44,973 - H281DRAFT_05771 0.54 -0.0 44,973 - H281DRAFT_05771 0.54 +0.2 45,005 + H281DRAFT_05771 0.58 -0.2 45,005 + H281DRAFT_05771 0.58 -2.2 45,456 - -0.6 45,462 + -1.3 45,462 + +0.4 45,462 + -0.3 45,463 - -3.0 45,615 - -1.1 45,615 - +1.1 45,655 - +0.6 45,655 - +0.0 45,655 - -0.7 45,711 + H281DRAFT_05772 0.10 +0.5 45,720 + H281DRAFT_05772 0.10 +0.2 45,720 + H281DRAFT_05772 0.10 -0.1 45,720 + H281DRAFT_05772 0.10 -0.5 45,741 - H281DRAFT_05772 0.12 +0.1 45,774 + H281DRAFT_05772 0.13 +0.5 45,849 + H281DRAFT_05772 0.17 +0.0 45,850 - H281DRAFT_05772 0.17 -0.1 45,896 + H281DRAFT_05772 0.19 +0.3 45,963 + H281DRAFT_05772 0.23 +0.2 46,027 - H281DRAFT_05772 0.26 +1.3 46,176 + H281DRAFT_05772 0.34 -1.0 46,176 + H281DRAFT_05772 0.34 +0.5 46,281 + H281DRAFT_05772 0.39 +0.1 46,282 - H281DRAFT_05772 0.39 -1.3
Or see this region's nucleotide sequence