Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05475 and H281DRAFT_05476 overlap by 1 nucleotides H281DRAFT_05476 and H281DRAFT_05477 are separated by 3 nucleotides
H281DRAFT_05475: H281DRAFT_05475 - Choline dehydrogenase, at 55,833 to 57,488
_05475
H281DRAFT_05476: H281DRAFT_05476 - Short-chain dehydrogenase, at 57,488 to 58,498
_05476
H281DRAFT_05477: H281DRAFT_05477 - Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family, at 58,502 to 60,277
_05477
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1 at 56.670 kb on + strand, within H281DRAFT_05475 at 56.671 kb on - strand, within H281DRAFT_05475 at 56.877 kb on + strand, within H281DRAFT_05475 at 56.877 kb on + strand, within H281DRAFT_05475 at 56.897 kb on - strand, within H281DRAFT_05475 at 56.958 kb on + strand, within H281DRAFT_05475 at 56.959 kb on - strand, within H281DRAFT_05475 at 56.959 kb on - strand, within H281DRAFT_05475 at 56.959 kb on - strand, within H281DRAFT_05475 at 57.051 kb on + strand, within H281DRAFT_05475 at 57.051 kb on + strand, within H281DRAFT_05475 at 57.364 kb on + strand at 57.364 kb on + strand at 57.365 kb on - strand at 57.839 kb on + strand, within H281DRAFT_05476 at 58.225 kb on - strand, within H281DRAFT_05476 at 58.282 kb on + strand, within H281DRAFT_05476 at 58.523 kb on + strand at 58.579 kb on - strand at 58.814 kb on - strand, within H281DRAFT_05477 at 58.941 kb on + strand, within H281DRAFT_05477 at 58.941 kb on + strand, within H281DRAFT_05477 at 59.414 kb on + strand, within H281DRAFT_05477 at 59.414 kb on + strand, within H281DRAFT_05477 at 59.415 kb on - strand, within H281DRAFT_05477
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 56,670 + H281DRAFT_05475 0.51 -0.2 56,671 - H281DRAFT_05475 0.51 +0.4 56,877 + H281DRAFT_05475 0.63 -0.6 56,877 + H281DRAFT_05475 0.63 -0.4 56,897 - H281DRAFT_05475 0.64 +1.3 56,958 + H281DRAFT_05475 0.68 +0.8 56,959 - H281DRAFT_05475 0.68 +0.8 56,959 - H281DRAFT_05475 0.68 +0.6 56,959 - H281DRAFT_05475 0.68 +0.4 57,051 + H281DRAFT_05475 0.74 -1.1 57,051 + H281DRAFT_05475 0.74 +0.2 57,364 + -0.3 57,364 + -1.3 57,365 - -0.3 57,839 + H281DRAFT_05476 0.35 +0.5 58,225 - H281DRAFT_05476 0.73 +0.5 58,282 + H281DRAFT_05476 0.79 -2.2 58,523 + -0.3 58,579 - +0.5 58,814 - H281DRAFT_05477 0.18 +0.5 58,941 + H281DRAFT_05477 0.25 +1.0 58,941 + H281DRAFT_05477 0.25 +0.8 59,414 + H281DRAFT_05477 0.51 -1.1 59,414 + H281DRAFT_05477 0.51 -0.3 59,415 - H281DRAFT_05477 0.51 -0.1
Or see this region's nucleotide sequence