Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05131

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05130 and H281DRAFT_05131 are separated by 80 nucleotidesH281DRAFT_05131 and H281DRAFT_05132 are separated by 2 nucleotides H281DRAFT_05130: H281DRAFT_05130 - 3-ketoacyl-CoA thiolase, at 79,489 to 80,790 _05130 H281DRAFT_05131: H281DRAFT_05131 - Acyl dehydratase, at 80,871 to 81,806 _05131 H281DRAFT_05132: H281DRAFT_05132 - 3-oxoacyl-[acyl-carrier protein] reductase, at 81,809 to 83,260 _05132 Position (kb) 80 81 82Strain fitness (log2 ratio) -1 0 1at 80.526 kb on - strand, within H281DRAFT_05130at 80.708 kb on + strandat 80.812 kb on + strandat 80.812 kb on + strandat 81.154 kb on + strand, within H281DRAFT_05131at 81.416 kb on - strand, within H281DRAFT_05131at 81.535 kb on + strand, within H281DRAFT_05131at 81.810 kb on + strandat 81.810 kb on + strandat 81.811 kb on - strandat 81.811 kb on - strandat 81.811 kb on - strandat 82.096 kb on - strand, within H281DRAFT_05132at 82.650 kb on + strand, within H281DRAFT_05132at 82.650 kb on + strand, within H281DRAFT_05132at 82.650 kb on + strand, within H281DRAFT_05132at 82.651 kb on - strand, within H281DRAFT_05132at 82.651 kb on - strand, within H281DRAFT_05132at 82.720 kb on - strand, within H281DRAFT_05132

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
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80,526 - H281DRAFT_05130 0.80 -1.0
80,708 + +0.1
80,812 + +0.8
80,812 + -0.2
81,154 + H281DRAFT_05131 0.30 -0.3
81,416 - H281DRAFT_05131 0.58 +0.1
81,535 + H281DRAFT_05131 0.71 -0.7
81,810 + -0.5
81,810 + -0.4
81,811 - +0.7
81,811 - +1.6
81,811 - +0.2
82,096 - H281DRAFT_05132 0.20 +0.2
82,650 + H281DRAFT_05132 0.58 +0.2
82,650 + H281DRAFT_05132 0.58 -1.3
82,650 + H281DRAFT_05132 0.58 +0.8
82,651 - H281DRAFT_05132 0.58 -1.1
82,651 - H281DRAFT_05132 0.58 +0.5
82,720 - H281DRAFT_05132 0.63 -0.2

Or see this region's nucleotide sequence