Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04668

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04667 and H281DRAFT_04668 are separated by 18 nucleotidesH281DRAFT_04668 and H281DRAFT_04669 are separated by 117 nucleotidesH281DRAFT_04669 and H281DRAFT_04670 are separated by 198 nucleotides H281DRAFT_04667: H281DRAFT_04667 - protein translocase subunit secF, at 68,851 to 69,801 _04667 H281DRAFT_04668: H281DRAFT_04668 - preprotein translocase subunit SecD, at 69,820 to 71,880 _04668 H281DRAFT_04669: H281DRAFT_04669 - protein translocase subunit yajC, at 71,998 to 72,327 _04669 H281DRAFT_04670: H281DRAFT_04670 - tRNA-guanine transglycosylase, at 72,526 to 73,716 _04670 Position (kb) 69 70 71 72Strain fitness (log2 ratio) -2 -1 0 1 2at 71.885 kb on - strandat 72.345 kb on - strandat 72.345 kb on - strandat 72.636 kb on - strandat 72.636 kb on - strandat 72.638 kb on + strandat 72.638 kb on + strandat 72.734 kb on + strand, within H281DRAFT_04670at 72.735 kb on - strand, within H281DRAFT_04670

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
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71,885 - +1.0
72,345 - +0.4
72,345 - +0.6
72,636 - -0.6
72,636 - +2.3
72,638 + -1.3
72,638 + -2.1
72,734 + H281DRAFT_04670 0.17 +0.8
72,735 - H281DRAFT_04670 0.18 -0.9

Or see this region's nucleotide sequence