Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04610 and H281DRAFT_04611 are separated by 34 nucleotides H281DRAFT_04611 and H281DRAFT_04612 are separated by 78 nucleotides H281DRAFT_04612 and H281DRAFT_04613 are separated by 67 nucleotides H281DRAFT_04613 and H281DRAFT_04614 are separated by 37 nucleotides
H281DRAFT_04610: H281DRAFT_04610 - Fe-S oxidoreductase, at 2,226 to 6,320
_04610
H281DRAFT_04611: H281DRAFT_04611 - Diadenosine tetraphosphate (Ap4A) hydrolase, at 6,355 to 6,783
_04611
H281DRAFT_04612: H281DRAFT_04612 - DUF971 family protein, at 6,862 to 7,275
_04612
H281DRAFT_04613: H281DRAFT_04613 - demethylmenaquinone methyltransferase /2-octaprenyl-6-methoxy-1,4-benzoquinone methylase, at 7,343 to 8,074
_04613
H281DRAFT_04614: H281DRAFT_04614 - Predicted lipid-binding transport protein, Tim44 family, at 8,112 to 9,101
_04614
Position (kb) 6
7
8 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5.881 kb on - strand, within H281DRAFT_04610 at 6.190 kb on - strand at 6.190 kb on - strand at 6.219 kb on + strand at 6.219 kb on + strand at 6.220 kb on - strand at 6.220 kb on - strand at 6.220 kb on - strand at 6.273 kb on + strand at 6.273 kb on + strand at 6.274 kb on - strand at 6.318 kb on + strand at 6.443 kb on - strand, within H281DRAFT_04611 at 6.561 kb on + strand, within H281DRAFT_04611 at 6.561 kb on + strand, within H281DRAFT_04611 at 6.849 kb on + strand at 6.850 kb on - strand at 6.940 kb on + strand, within H281DRAFT_04612 at 6.940 kb on + strand, within H281DRAFT_04612 at 6.958 kb on + strand, within H281DRAFT_04612 at 7.090 kb on + strand, within H281DRAFT_04612 at 7.091 kb on - strand, within H281DRAFT_04612 at 7.135 kb on + strand, within H281DRAFT_04612 at 7.135 kb on + strand at 7.135 kb on + strand, within H281DRAFT_04612 at 7.135 kb on + strand, within H281DRAFT_04612 at 7.135 kb on + strand, within H281DRAFT_04612 at 7.136 kb on - strand, within H281DRAFT_04612 at 7.136 kb on - strand, within H281DRAFT_04612 at 7.153 kb on + strand, within H281DRAFT_04612 at 7.153 kb on + strand, within H281DRAFT_04612 at 7.192 kb on + strand, within H281DRAFT_04612 at 7.192 kb on + strand, within H281DRAFT_04612 at 7.276 kb on + strand at 7.277 kb on - strand at 8.070 kb on - strand at 8.070 kb on - strand at 8.072 kb on + strand at 8.081 kb on + strand at 8.131 kb on + strand at 8.132 kb on - strand at 8.141 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 5,881 - H281DRAFT_04610 0.89 -4.0 6,190 - -3.4 6,190 - -3.2 6,219 + -2.4 6,219 + -0.6 6,220 - -4.3 6,220 - -3.6 6,220 - -3.2 6,273 + -4.9 6,273 + -3.5 6,274 - -4.1 6,318 + +0.2 6,443 - H281DRAFT_04611 0.21 -0.3 6,561 + H281DRAFT_04611 0.48 -0.3 6,561 + H281DRAFT_04611 0.48 -1.2 6,849 + +0.6 6,850 - +2.5 6,940 + H281DRAFT_04612 0.19 +0.7 6,940 + H281DRAFT_04612 0.19 -1.2 6,958 + H281DRAFT_04612 0.23 -0.8 7,090 + H281DRAFT_04612 0.55 +0.7 7,091 - H281DRAFT_04612 0.55 +1.2 7,135 + H281DRAFT_04612 0.66 +1.0 7,135 + -0.6 7,135 + H281DRAFT_04612 0.66 +0.3 7,135 + H281DRAFT_04612 0.66 +0.6 7,135 + H281DRAFT_04612 0.66 -0.1 7,136 - H281DRAFT_04612 0.66 +0.8 7,136 - H281DRAFT_04612 0.66 +0.8 7,153 + H281DRAFT_04612 0.70 -0.5 7,153 + H281DRAFT_04612 0.70 +0.5 7,192 + H281DRAFT_04612 0.80 +0.0 7,192 + H281DRAFT_04612 0.80 +0.6 7,276 + +0.1 7,277 - -0.8 8,070 - -0.6 8,070 - -1.9 8,072 + +0.1 8,081 + -0.6 8,131 + +0.2 8,132 - -0.9 8,141 + -0.6
Or see this region's nucleotide sequence