Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03942 and H281DRAFT_03943 are separated by 8 nucleotides H281DRAFT_03943 and H281DRAFT_03944 are separated by 82 nucleotides H281DRAFT_03944 and H281DRAFT_03945 are separated by 182 nucleotides
H281DRAFT_03942: H281DRAFT_03942 - formate dehydrogenase alpha subunit, at 41,889 to 44,840
_03942
H281DRAFT_03943: H281DRAFT_03943 - formate dehydrogenase delta subunit (EC 1.2.1.2), at 44,849 to 45,100
_03943
H281DRAFT_03944: H281DRAFT_03944 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 45,183 to 46,907
_03944
H281DRAFT_03945: H281DRAFT_03945 - cobalt-zinc-cadmium efflux system protein, at 47,090 to 48,382
_03945
Position (kb) 45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 44.241 kb on + strand, within H281DRAFT_03942 at 44.242 kb on - strand, within H281DRAFT_03942 at 44.242 kb on - strand, within H281DRAFT_03942 at 44.358 kb on - strand, within H281DRAFT_03942 at 44.436 kb on + strand, within H281DRAFT_03942 at 44.436 kb on + strand, within H281DRAFT_03942 at 44.436 kb on + strand, within H281DRAFT_03942 at 44.628 kb on - strand at 44.666 kb on + strand at 44.707 kb on - strand at 44.834 kb on + strand at 45.110 kb on + strand at 45.110 kb on + strand at 45.110 kb on + strand at 45.111 kb on - strand at 45.142 kb on - strand at 45.184 kb on + strand at 45.204 kb on + strand at 45.310 kb on + strand at 45.310 kb on + strand at 45.311 kb on - strand at 45.311 kb on - strand at 45.334 kb on + strand at 45.334 kb on + strand at 45.865 kb on + strand, within H281DRAFT_03944 at 45.865 kb on + strand, within H281DRAFT_03944 at 45.865 kb on + strand, within H281DRAFT_03944 at 45.866 kb on - strand, within H281DRAFT_03944 at 45.866 kb on - strand, within H281DRAFT_03944 at 45.978 kb on - strand, within H281DRAFT_03944 at 46.058 kb on - strand, within H281DRAFT_03944 at 46.058 kb on - strand, within H281DRAFT_03944 at 46.058 kb on - strand, within H281DRAFT_03944 at 46.429 kb on + strand, within H281DRAFT_03944 at 46.429 kb on + strand, within H281DRAFT_03944 at 46.430 kb on - strand, within H281DRAFT_03944 at 46.603 kb on + strand, within H281DRAFT_03944 at 46.604 kb on - strand, within H281DRAFT_03944 at 46.814 kb on + strand at 46.815 kb on - strand at 46.936 kb on + strand at 46.937 kb on - strand at 46.942 kb on - strand at 46.991 kb on + strand at 47.016 kb on - strand at 47.418 kb on + strand, within H281DRAFT_03945 at 47.476 kb on + strand, within H281DRAFT_03945 at 47.478 kb on + strand, within H281DRAFT_03945 at 47.537 kb on - strand, within H281DRAFT_03945 at 47.537 kb on - strand at 47.775 kb on + strand, within H281DRAFT_03945 at 47.898 kb on + strand, within H281DRAFT_03945 at 47.899 kb on - strand, within H281DRAFT_03945 at 47.899 kb on - strand, within H281DRAFT_03945 at 47.899 kb on - strand, within H281DRAFT_03945 at 47.899 kb on - strand, within H281DRAFT_03945 at 47.901 kb on - strand, within H281DRAFT_03945 at 47.901 kb on - strand, within H281DRAFT_03945 at 47.901 kb on - strand, within H281DRAFT_03945 at 47.901 kb on - strand, within H281DRAFT_03945
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 44,241 + H281DRAFT_03942 0.80 +0.0 44,242 - H281DRAFT_03942 0.80 +0.8 44,242 - H281DRAFT_03942 0.80 +0.8 44,358 - H281DRAFT_03942 0.84 -0.0 44,436 + H281DRAFT_03942 0.86 -0.5 44,436 + H281DRAFT_03942 0.86 -0.3 44,436 + H281DRAFT_03942 0.86 +1.5 44,628 - -1.3 44,666 + -1.5 44,707 - +1.8 44,834 + +0.3 45,110 + +0.3 45,110 + -1.6 45,110 + -0.5 45,111 - +0.1 45,142 - +0.7 45,184 + -0.2 45,204 + +2.6 45,310 + -0.2 45,310 + +1.0 45,311 - +1.0 45,311 - +0.9 45,334 + +0.3 45,334 + +0.7 45,865 + H281DRAFT_03944 0.40 -0.2 45,865 + H281DRAFT_03944 0.40 +0.1 45,865 + H281DRAFT_03944 0.40 +0.0 45,866 - H281DRAFT_03944 0.40 +3.7 45,866 - H281DRAFT_03944 0.40 +0.8 45,978 - H281DRAFT_03944 0.46 -1.8 46,058 - H281DRAFT_03944 0.51 -0.0 46,058 - H281DRAFT_03944 0.51 +0.3 46,058 - H281DRAFT_03944 0.51 +0.6 46,429 + H281DRAFT_03944 0.72 -0.6 46,429 + H281DRAFT_03944 0.72 +1.8 46,430 - H281DRAFT_03944 0.72 -0.6 46,603 + H281DRAFT_03944 0.82 +1.0 46,604 - H281DRAFT_03944 0.82 +0.5 46,814 + +0.9 46,815 - -0.2 46,936 + +1.4 46,937 - -0.1 46,942 - -0.9 46,991 + +1.1 47,016 - +0.6 47,418 + H281DRAFT_03945 0.25 +0.5 47,476 + H281DRAFT_03945 0.30 +0.2 47,478 + H281DRAFT_03945 0.30 +1.5 47,537 - H281DRAFT_03945 0.35 -1.4 47,537 - +2.0 47,775 + H281DRAFT_03945 0.53 +0.1 47,898 + H281DRAFT_03945 0.62 +0.1 47,899 - H281DRAFT_03945 0.63 +0.3 47,899 - H281DRAFT_03945 0.63 +0.4 47,899 - H281DRAFT_03945 0.63 +0.3 47,899 - H281DRAFT_03945 0.63 -0.8 47,901 - H281DRAFT_03945 0.63 -0.2 47,901 - H281DRAFT_03945 0.63 +0.3 47,901 - H281DRAFT_03945 0.63 +1.7 47,901 - H281DRAFT_03945 0.63 -0.4
Or see this region's nucleotide sequence