Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03857 and H281DRAFT_03858 are separated by 216 nucleotides H281DRAFT_03858 and H281DRAFT_03859 are separated by 219 nucleotides
H281DRAFT_03857: H281DRAFT_03857 - MFS transporter, ACS family, D-galactonate transporter, at 385,813 to 387,129
_03857
H281DRAFT_03858: H281DRAFT_03858 - DNA-binding transcriptional regulator, LysR family, at 387,346 to 388,260
_03858
H281DRAFT_03859: H281DRAFT_03859 - hypothetical protein, at 388,480 to 389,343
_03859
Position (kb) 387
388
389 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 386.436 kb on + strand, within H281DRAFT_03857 at 386.600 kb on + strand, within H281DRAFT_03857 at 386.600 kb on + strand, within H281DRAFT_03857 at 386.667 kb on - strand, within H281DRAFT_03857 at 386.709 kb on + strand, within H281DRAFT_03857 at 386.709 kb on + strand, within H281DRAFT_03857 at 386.909 kb on + strand, within H281DRAFT_03857 at 386.909 kb on + strand, within H281DRAFT_03857 at 387.014 kb on + strand at 387.015 kb on - strand at 387.049 kb on + strand at 387.050 kb on - strand at 387.254 kb on + strand at 387.255 kb on - strand at 387.281 kb on + strand at 387.282 kb on - strand at 387.304 kb on + strand at 387.318 kb on + strand at 387.374 kb on + strand at 387.427 kb on + strand at 387.427 kb on + strand at 387.427 kb on + strand at 387.450 kb on + strand, within H281DRAFT_03858 at 387.566 kb on - strand, within H281DRAFT_03858 at 387.622 kb on - strand, within H281DRAFT_03858 at 387.989 kb on + strand, within H281DRAFT_03858 at 387.990 kb on - strand, within H281DRAFT_03858 at 388.106 kb on + strand, within H281DRAFT_03858 at 388.106 kb on + strand, within H281DRAFT_03858 at 388.107 kb on - strand, within H281DRAFT_03858 at 388.190 kb on + strand at 388.207 kb on - strand at 388.207 kb on - strand at 388.233 kb on + strand at 388.343 kb on + strand at 388.343 kb on + strand at 388.371 kb on - strand at 388.472 kb on + strand at 388.539 kb on - strand at 388.556 kb on + strand at 388.556 kb on + strand at 388.557 kb on - strand at 388.878 kb on - strand, within H281DRAFT_03859 at 388.878 kb on - strand, within H281DRAFT_03859 at 388.907 kb on + strand, within H281DRAFT_03859 at 388.907 kb on + strand, within H281DRAFT_03859 at 388.908 kb on - strand, within H281DRAFT_03859
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 386,436 + H281DRAFT_03857 0.47 +0.2 386,600 + H281DRAFT_03857 0.60 +0.7 386,600 + H281DRAFT_03857 0.60 -0.5 386,667 - H281DRAFT_03857 0.65 -0.3 386,709 + H281DRAFT_03857 0.68 -2.3 386,709 + H281DRAFT_03857 0.68 -0.2 386,909 + H281DRAFT_03857 0.83 +0.9 386,909 + H281DRAFT_03857 0.83 +1.0 387,014 + +1.9 387,015 - +0.1 387,049 + +3.9 387,050 - -0.2 387,254 + +1.0 387,255 - +0.6 387,281 + +0.6 387,282 - -0.8 387,304 + +0.9 387,318 + -1.7 387,374 + -0.9 387,427 + -2.7 387,427 + -0.3 387,427 + +0.3 387,450 + H281DRAFT_03858 0.11 +0.4 387,566 - H281DRAFT_03858 0.24 -1.5 387,622 - H281DRAFT_03858 0.30 +0.3 387,989 + H281DRAFT_03858 0.70 -1.2 387,990 - H281DRAFT_03858 0.70 -0.1 388,106 + H281DRAFT_03858 0.83 +1.5 388,106 + H281DRAFT_03858 0.83 +0.4 388,107 - H281DRAFT_03858 0.83 +0.4 388,190 + -0.5 388,207 - +1.2 388,207 - -0.2 388,233 + +3.5 388,343 + +0.4 388,343 + +0.0 388,371 - +2.5 388,472 + -0.5 388,539 - -0.5 388,556 + +0.1 388,556 + +1.2 388,557 - +0.4 388,878 - H281DRAFT_03859 0.46 -1.0 388,878 - H281DRAFT_03859 0.46 +0.3 388,907 + H281DRAFT_03859 0.49 -0.4 388,907 + H281DRAFT_03859 0.49 +0.1 388,908 - H281DRAFT_03859 0.50 -0.2
Or see this region's nucleotide sequence