Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03854 and H281DRAFT_03855 overlap by 4 nucleotides H281DRAFT_03855 and H281DRAFT_03856 overlap by 4 nucleotides H281DRAFT_03856 and H281DRAFT_03857 are separated by 32 nucleotides
H281DRAFT_03854: H281DRAFT_03854 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 383,356 to 384,198
_03854
H281DRAFT_03855: H281DRAFT_03855 - Sugar phosphate isomerase/epimerase, at 384,195 to 385,043
_03855
H281DRAFT_03856: H281DRAFT_03856 - 3-oxoacyl-[acyl-carrier protein] reductase, at 385,040 to 385,780
_03856
H281DRAFT_03857: H281DRAFT_03857 - MFS transporter, ACS family, D-galactonate transporter, at 385,813 to 387,129
_03857
Position (kb) 385
386 Strain fitness (log2 ratio) -2
-1
0
1 at 384.114 kb on - strand at 384.846 kb on + strand, within H281DRAFT_03855 at 384.846 kb on + strand, within H281DRAFT_03855 at 384.847 kb on - strand, within H281DRAFT_03855 at 385.076 kb on - strand at 385.076 kb on - strand at 385.299 kb on - strand, within H281DRAFT_03856 at 385.429 kb on - strand, within H281DRAFT_03856 at 385.482 kb on + strand, within H281DRAFT_03856 at 385.781 kb on - strand at 385.825 kb on - strand at 386.128 kb on + strand, within H281DRAFT_03857 at 386.129 kb on - strand, within H281DRAFT_03857 at 386.315 kb on + strand, within H281DRAFT_03857 at 386.436 kb on + strand, within H281DRAFT_03857 at 386.600 kb on + strand, within H281DRAFT_03857 at 386.600 kb on + strand, within H281DRAFT_03857 at 386.667 kb on - strand, within H281DRAFT_03857 at 386.709 kb on + strand, within H281DRAFT_03857 at 386.709 kb on + strand, within H281DRAFT_03857
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 384,114 - -0.5 384,846 + H281DRAFT_03855 0.77 +0.2 384,846 + H281DRAFT_03855 0.77 -1.7 384,847 - H281DRAFT_03855 0.77 -1.2 385,076 - -0.3 385,076 - -0.0 385,299 - H281DRAFT_03856 0.35 -0.7 385,429 - H281DRAFT_03856 0.52 -0.9 385,482 + H281DRAFT_03856 0.60 +0.6 385,781 - +0.8 385,825 - -0.1 386,128 + H281DRAFT_03857 0.24 +0.2 386,129 - H281DRAFT_03857 0.24 +1.1 386,315 + H281DRAFT_03857 0.38 +0.5 386,436 + H281DRAFT_03857 0.47 +0.2 386,600 + H281DRAFT_03857 0.60 +0.7 386,600 + H281DRAFT_03857 0.60 -0.5 386,667 - H281DRAFT_03857 0.65 -0.3 386,709 + H281DRAFT_03857 0.68 -2.3 386,709 + H281DRAFT_03857 0.68 -0.2
Or see this region's nucleotide sequence