Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03809 and H281DRAFT_03810 are separated by 99 nucleotides H281DRAFT_03810 and H281DRAFT_03811 are separated by 26 nucleotides
H281DRAFT_03809: H281DRAFT_03809 - transcriptional regulator, LysR family, at 331,406 to 332,299
_03809
H281DRAFT_03810: H281DRAFT_03810 - citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family, at 332,399 to 333,703
_03810
H281DRAFT_03811: H281DRAFT_03811 - Protein of unknown function (DUF1446), at 333,730 to 335,088
_03811
Position (kb) 332
333
334 Strain fitness (log2 ratio) -1
0
1 at 331.626 kb on + strand, within H281DRAFT_03809 at 331.627 kb on - strand, within H281DRAFT_03809 at 331.627 kb on - strand, within H281DRAFT_03809 at 331.821 kb on - strand, within H281DRAFT_03809 at 331.821 kb on - strand, within H281DRAFT_03809 at 331.821 kb on - strand, within H281DRAFT_03809 at 332.309 kb on + strand at 333.207 kb on - strand, within H281DRAFT_03810 at 333.575 kb on - strand at 333.709 kb on - strand at 333.839 kb on - strand at 334.159 kb on + strand, within H281DRAFT_03811 at 334.189 kb on + strand, within H281DRAFT_03811 at 334.189 kb on + strand, within H281DRAFT_03811 at 334.564 kb on + strand, within H281DRAFT_03811 at 334.691 kb on - strand, within H281DRAFT_03811
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 331,626 + H281DRAFT_03809 0.25 +0.4 331,627 - H281DRAFT_03809 0.25 +0.9 331,627 - H281DRAFT_03809 0.25 +0.8 331,821 - H281DRAFT_03809 0.46 +0.5 331,821 - H281DRAFT_03809 0.46 -1.7 331,821 - H281DRAFT_03809 0.46 +1.5 332,309 + +0.5 333,207 - H281DRAFT_03810 0.62 -1.0 333,575 - -0.5 333,709 - +0.5 333,839 - +0.1 334,159 + H281DRAFT_03811 0.32 -0.5 334,189 + H281DRAFT_03811 0.34 -1.2 334,189 + H281DRAFT_03811 0.34 +0.9 334,564 + H281DRAFT_03811 0.61 +0.9 334,691 - H281DRAFT_03811 0.71 +1.0
Or see this region's nucleotide sequence