Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03487 and H281DRAFT_03488 are separated by 35 nucleotides H281DRAFT_03488 and H281DRAFT_03489 are separated by 13 nucleotides H281DRAFT_03489 and H281DRAFT_03490 are separated by 18 nucleotides
H281DRAFT_03487: H281DRAFT_03487 - osmoprotectant transport system substrate-binding protein, at 571,556 to 572,452
_03487
H281DRAFT_03488: H281DRAFT_03488 - Predicted amidohydrolase, at 572,488 to 573,366
_03488
H281DRAFT_03489: H281DRAFT_03489 - Acyl-CoA dehydrogenase, at 573,380 to 574,567
_03489
H281DRAFT_03490: H281DRAFT_03490 - fatty-acyl-CoA synthase, at 574,586 to 576,184
_03490
Position (kb) 573
574
575 Strain fitness (log2 ratio) -1
0
1
2
3 at 572.755 kb on - strand, within H281DRAFT_03488 at 572.797 kb on + strand, within H281DRAFT_03488 at 572.798 kb on - strand, within H281DRAFT_03488 at 573.659 kb on - strand, within H281DRAFT_03489 at 573.829 kb on + strand, within H281DRAFT_03489 at 573.894 kb on - strand, within H281DRAFT_03489 at 573.894 kb on - strand, within H281DRAFT_03489 at 573.894 kb on - strand, within H281DRAFT_03489 at 573.894 kb on - strand, within H281DRAFT_03489 at 573.976 kb on + strand, within H281DRAFT_03489 at 573.977 kb on - strand, within H281DRAFT_03489 at 574.162 kb on + strand, within H281DRAFT_03489 at 574.292 kb on - strand, within H281DRAFT_03489 at 574.313 kb on + strand, within H281DRAFT_03489 at 574.445 kb on + strand, within H281DRAFT_03489 at 574.791 kb on - strand, within H281DRAFT_03490 at 574.961 kb on + strand, within H281DRAFT_03490 at 575.025 kb on - strand, within H281DRAFT_03490 at 575.250 kb on - strand, within H281DRAFT_03490
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 572,755 - H281DRAFT_03488 0.30 +0.4 572,797 + H281DRAFT_03488 0.35 -0.6 572,798 - H281DRAFT_03488 0.35 +0.1 573,659 - H281DRAFT_03489 0.23 +0.0 573,829 + H281DRAFT_03489 0.38 +0.0 573,894 - H281DRAFT_03489 0.43 +0.2 573,894 - H281DRAFT_03489 0.43 +2.9 573,894 - H281DRAFT_03489 0.43 +0.4 573,894 - H281DRAFT_03489 0.43 -0.2 573,976 + H281DRAFT_03489 0.50 +0.4 573,977 - H281DRAFT_03489 0.50 -0.2 574,162 + H281DRAFT_03489 0.66 +0.8 574,292 - H281DRAFT_03489 0.77 -0.3 574,313 + H281DRAFT_03489 0.79 +0.1 574,445 + H281DRAFT_03489 0.90 +1.8 574,791 - H281DRAFT_03490 0.13 -0.1 574,961 + H281DRAFT_03490 0.23 -1.2 575,025 - H281DRAFT_03490 0.27 -0.9 575,250 - H281DRAFT_03490 0.42 +0.5
Or see this region's nucleotide sequence