Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03406 and H281DRAFT_03407 are separated by 272 nucleotides H281DRAFT_03407 and H281DRAFT_03408 are separated by 143 nucleotides
H281DRAFT_03406: H281DRAFT_03406 - Protein of unknown function (DUF3455), at 476,693 to 477,208
_03406
H281DRAFT_03407: H281DRAFT_03407 - catalase, at 477,481 to 478,560
_03407
H281DRAFT_03408: H281DRAFT_03408 - Transmembrane transcriptional regulator (anti-sigma factor RsiW), at 478,704 to 479,567
_03408
Position (kb) 477
478
479 Strain fitness (log2 ratio) -2
-1
0
1
2 at 476.482 kb on - strand at 476.849 kb on + strand, within H281DRAFT_03406 at 476.915 kb on + strand, within H281DRAFT_03406 at 476.916 kb on - strand, within H281DRAFT_03406 at 477.179 kb on + strand at 477.179 kb on + strand at 477.180 kb on - strand at 477.183 kb on + strand at 477.192 kb on - strand at 477.200 kb on + strand at 477.201 kb on - strand at 477.202 kb on + strand at 477.231 kb on + strand at 477.232 kb on - strand at 477.235 kb on + strand at 477.235 kb on + strand at 477.236 kb on - strand at 477.304 kb on + strand at 477.533 kb on - strand at 477.798 kb on - strand, within H281DRAFT_03407 at 477.918 kb on - strand, within H281DRAFT_03407 at 478.103 kb on - strand, within H281DRAFT_03407 at 478.103 kb on - strand, within H281DRAFT_03407 at 478.110 kb on + strand, within H281DRAFT_03407 at 478.182 kb on - strand, within H281DRAFT_03407 at 478.182 kb on - strand, within H281DRAFT_03407 at 478.401 kb on - strand, within H281DRAFT_03407 at 478.498 kb on + strand at 478.498 kb on + strand at 478.499 kb on - strand at 478.575 kb on + strand at 478.576 kb on - strand at 478.580 kb on - strand at 478.580 kb on - strand at 478.626 kb on + strand at 479.142 kb on + strand, within H281DRAFT_03408 at 479.143 kb on - strand, within H281DRAFT_03408 at 479.143 kb on - strand, within H281DRAFT_03408
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 476,482 - +0.3 476,849 + H281DRAFT_03406 0.30 -0.1 476,915 + H281DRAFT_03406 0.43 +0.2 476,916 - H281DRAFT_03406 0.43 -0.4 477,179 + -0.0 477,179 + -0.4 477,180 - -0.3 477,183 + -0.0 477,192 - +0.3 477,200 + +0.5 477,201 - -0.6 477,202 + -0.1 477,231 + +1.0 477,232 - +1.1 477,235 + -2.2 477,235 + +2.1 477,236 - +0.0 477,304 + +1.0 477,533 - -0.1 477,798 - H281DRAFT_03407 0.29 -0.3 477,918 - H281DRAFT_03407 0.40 -0.2 478,103 - H281DRAFT_03407 0.58 +0.6 478,103 - H281DRAFT_03407 0.58 -1.1 478,110 + H281DRAFT_03407 0.58 -0.6 478,182 - H281DRAFT_03407 0.65 +0.6 478,182 - H281DRAFT_03407 0.65 +0.1 478,401 - H281DRAFT_03407 0.85 +0.1 478,498 + +0.5 478,498 + -1.1 478,499 - +0.7 478,575 + -0.4 478,576 - +0.2 478,580 - -1.2 478,580 - -1.1 478,626 + -1.6 479,142 + H281DRAFT_03408 0.51 -0.6 479,143 - H281DRAFT_03408 0.51 -0.3 479,143 - H281DRAFT_03408 0.51 -0.9
Or see this region's nucleotide sequence