Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03333 and H281DRAFT_03334 are separated by 93 nucleotides H281DRAFT_03334 and H281DRAFT_03335 are separated by 231 nucleotides H281DRAFT_03335 and H281DRAFT_03336 overlap by 4 nucleotides
H281DRAFT_03333: H281DRAFT_03333 - hypothetical protein, at 390,602 to 391,663
_03333
H281DRAFT_03334: H281DRAFT_03334 - transcriptional regulator, ArsR family, at 391,757 to 392,047
_03334
H281DRAFT_03335: H281DRAFT_03335 - transcriptional regulator, LysR family, at 392,279 to 393,247
_03335
H281DRAFT_03336: H281DRAFT_03336 - Na+/H+-dicarboxylate symporter, at 393,244 to 394,560
_03336
Position (kb) 392
393
394 Strain fitness (log2 ratio) -2
-1
0
1
2 at 391.467 kb on + strand, within H281DRAFT_03333 at 391.537 kb on - strand, within H281DRAFT_03333 at 391.540 kb on - strand, within H281DRAFT_03333 at 391.934 kb on + strand, within H281DRAFT_03334 at 392.142 kb on + strand at 392.218 kb on - strand at 392.861 kb on + strand, within H281DRAFT_03335 at 392.862 kb on - strand, within H281DRAFT_03335 at 393.381 kb on - strand, within H281DRAFT_03336 at 393.559 kb on - strand, within H281DRAFT_03336 at 393.605 kb on - strand, within H281DRAFT_03336 at 393.925 kb on + strand, within H281DRAFT_03336 at 393.926 kb on - strand, within H281DRAFT_03336 at 394.009 kb on + strand, within H281DRAFT_03336 at 394.010 kb on - strand, within H281DRAFT_03336
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 391,467 + H281DRAFT_03333 0.81 -0.4 391,537 - H281DRAFT_03333 0.88 +1.6 391,540 - H281DRAFT_03333 0.88 +1.1 391,934 + H281DRAFT_03334 0.61 -1.4 392,142 + +1.4 392,218 - -1.9 392,861 + H281DRAFT_03335 0.60 +0.5 392,862 - H281DRAFT_03335 0.60 -0.7 393,381 - H281DRAFT_03336 0.10 +0.4 393,559 - H281DRAFT_03336 0.24 +0.2 393,605 - H281DRAFT_03336 0.27 +0.8 393,925 + H281DRAFT_03336 0.52 +1.5 393,926 - H281DRAFT_03336 0.52 +0.9 394,009 + H281DRAFT_03336 0.58 -0.1 394,010 - H281DRAFT_03336 0.58 +2.6
Or see this region's nucleotide sequence