Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03312 and H281DRAFT_03313 are separated by 21 nucleotides H281DRAFT_03313 and H281DRAFT_03314 are separated by 133 nucleotides H281DRAFT_03314 and H281DRAFT_03315 are separated by 252 nucleotides
H281DRAFT_03312: H281DRAFT_03312 - PAS domain S-box-containing protein, at 375,426 to 377,774
_03312
H281DRAFT_03313: H281DRAFT_03313 - hypothetical protein, at 377,796 to 378,074
_03313
H281DRAFT_03314: H281DRAFT_03314 - hypothetical protein, at 378,208 to 378,696
_03314
H281DRAFT_03315: H281DRAFT_03315 - HSP20 family protein, at 378,949 to 379,389
_03315
Position (kb) 377
378
379 Strain fitness (log2 ratio) -1
0
1 at 376.858 kb on - strand, within H281DRAFT_03312 at 376.858 kb on - strand, within H281DRAFT_03312 at 376.858 kb on - strand, within H281DRAFT_03312 at 376.897 kb on - strand, within H281DRAFT_03312 at 376.897 kb on - strand, within H281DRAFT_03312 at 376.933 kb on - strand, within H281DRAFT_03312 at 377.359 kb on + strand, within H281DRAFT_03312 at 377.627 kb on + strand at 377.648 kb on - strand at 377.729 kb on + strand at 377.772 kb on + strand at 378.025 kb on + strand, within H281DRAFT_03313 at 378.030 kb on - strand, within H281DRAFT_03313 at 378.030 kb on - strand, within H281DRAFT_03313 at 378.181 kb on - strand at 378.593 kb on - strand, within H281DRAFT_03314 at 378.730 kb on + strand at 378.730 kb on + strand at 378.731 kb on - strand at 378.902 kb on - strand at 378.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 376,858 - H281DRAFT_03312 0.61 -0.6 376,858 - H281DRAFT_03312 0.61 +0.2 376,858 - H281DRAFT_03312 0.61 +0.6 376,897 - H281DRAFT_03312 0.63 +0.9 376,897 - H281DRAFT_03312 0.63 +0.6 376,933 - H281DRAFT_03312 0.64 +0.5 377,359 + H281DRAFT_03312 0.82 -0.3 377,627 + -0.6 377,648 - +0.0 377,729 + -1.2 377,772 + +1.0 378,025 + H281DRAFT_03313 0.82 -0.9 378,030 - H281DRAFT_03313 0.84 -0.1 378,030 - H281DRAFT_03313 0.84 -0.8 378,181 - +0.1 378,593 - H281DRAFT_03314 0.79 -0.1 378,730 + +0.1 378,730 + -0.3 378,731 - -0.3 378,902 - +0.1 378,930 + +0.2
Or see this region's nucleotide sequence