Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03148 and H281DRAFT_03149 are separated by 221 nucleotides H281DRAFT_03149 and H281DRAFT_03150 are separated by 252 nucleotides H281DRAFT_03150 and H281DRAFT_03151 are separated by 22 nucleotides H281DRAFT_03151 and H281DRAFT_03152 are separated by 54 nucleotides
H281DRAFT_03148: H281DRAFT_03148 - hypothetical protein, at 187,771 to 188,844
_03148
H281DRAFT_03149: H281DRAFT_03149 - hypothetical protein, at 189,066 to 189,404
_03149
H281DRAFT_03150: H281DRAFT_03150 - DNA-binding protein H-NS, at 189,657 to 190,529
_03150
H281DRAFT_03151: H281DRAFT_03151 - hypothetical protein, at 190,552 to 191,037
_03151
H281DRAFT_03152: H281DRAFT_03152 - hypothetical protein, at 191,092 to 191,673
_03152
Position (kb) 189
190
191 Strain fitness (log2 ratio) -2
-1
0
1 at 188.825 kb on - strand at 188.825 kb on - strand at 188.924 kb on + strand at 188.924 kb on + strand at 188.925 kb on - strand at 188.925 kb on - strand at 188.995 kb on + strand at 189.043 kb on + strand at 189.047 kb on + strand at 189.047 kb on + strand at 189.048 kb on - strand at 189.048 kb on - strand at 189.048 kb on - strand at 189.518 kb on + strand at 189.519 kb on - strand at 189.612 kb on + strand at 189.612 kb on + strand at 189.612 kb on + strand at 189.612 kb on + strand at 189.624 kb on - strand at 189.624 kb on - strand at 189.643 kb on + strand at 189.644 kb on - strand at 189.644 kb on - strand at 189.667 kb on + strand at 189.794 kb on + strand, within H281DRAFT_03150 at 189.897 kb on + strand, within H281DRAFT_03150 at 190.080 kb on + strand, within H281DRAFT_03150 at 190.080 kb on + strand, within H281DRAFT_03150 at 190.081 kb on - strand, within H281DRAFT_03150 at 190.081 kb on - strand, within H281DRAFT_03150 at 190.081 kb on - strand, within H281DRAFT_03150 at 190.483 kb on + strand at 190.549 kb on + strand at 190.549 kb on + strand at 190.840 kb on + strand, within H281DRAFT_03151 at 190.841 kb on - strand, within H281DRAFT_03151 at 191.166 kb on + strand, within H281DRAFT_03152 at 191.272 kb on - strand, within H281DRAFT_03152 at 191.384 kb on + strand, within H281DRAFT_03152 at 191.517 kb on + strand, within H281DRAFT_03152
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 188,825 - +0.8 188,825 - +0.4 188,924 + -0.1 188,924 + +0.1 188,925 - +1.0 188,925 - -0.2 188,995 + +0.9 189,043 + +0.7 189,047 + +0.6 189,047 + -0.7 189,048 - -0.1 189,048 - -0.2 189,048 - -0.3 189,518 + -0.7 189,519 - -1.9 189,612 + -0.6 189,612 + +0.3 189,612 + +0.7 189,612 + +0.7 189,624 - -0.4 189,624 - -2.7 189,643 + +0.4 189,644 - +0.3 189,644 - -0.3 189,667 + -0.3 189,794 + H281DRAFT_03150 0.16 +0.4 189,897 + H281DRAFT_03150 0.27 +0.3 190,080 + H281DRAFT_03150 0.48 +0.1 190,080 + H281DRAFT_03150 0.48 +0.7 190,081 - H281DRAFT_03150 0.49 +0.4 190,081 - H281DRAFT_03150 0.49 +1.4 190,081 - H281DRAFT_03150 0.49 -1.5 190,483 + -0.4 190,549 + +0.9 190,549 + +0.3 190,840 + H281DRAFT_03151 0.59 +0.2 190,841 - H281DRAFT_03151 0.59 +1.2 191,166 + H281DRAFT_03152 0.13 +0.1 191,272 - H281DRAFT_03152 0.31 +0.8 191,384 + H281DRAFT_03152 0.50 +0.0 191,517 + H281DRAFT_03152 0.73 +0.1
Or see this region's nucleotide sequence