Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03131 and H281DRAFT_03132 are separated by 104 nucleotides H281DRAFT_03132 and H281DRAFT_03133 are separated by 450 nucleotides
H281DRAFT_03131: H281DRAFT_03131 - proton-dependent oligopeptide transporter, POT family, at 165,529 to 167,070
_03131
H281DRAFT_03132: H281DRAFT_03132 - transcriptional regulator, GntR family, at 167,175 to 168,662
_03132
H281DRAFT_03133: H281DRAFT_03133 - DNA-binding protein, at 169,113 to 169,565
_03133
Position (kb) 167
168
169 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 166.384 kb on + strand, within H281DRAFT_03131 at 166.384 kb on + strand at 166.384 kb on + strand, within H281DRAFT_03131 at 166.385 kb on - strand, within H281DRAFT_03131 at 166.468 kb on - strand, within H281DRAFT_03131 at 166.546 kb on - strand, within H281DRAFT_03131 at 166.760 kb on - strand at 166.760 kb on - strand, within H281DRAFT_03131 at 166.902 kb on + strand, within H281DRAFT_03131 at 166.903 kb on - strand, within H281DRAFT_03131 at 167.141 kb on + strand at 167.367 kb on + strand, within H281DRAFT_03132 at 167.673 kb on + strand, within H281DRAFT_03132 at 167.674 kb on - strand, within H281DRAFT_03132 at 168.078 kb on + strand, within H281DRAFT_03132 at 168.153 kb on + strand, within H281DRAFT_03132 at 168.153 kb on + strand, within H281DRAFT_03132 at 168.351 kb on + strand, within H281DRAFT_03132 at 168.440 kb on + strand, within H281DRAFT_03132 at 168.441 kb on - strand, within H281DRAFT_03132 at 168.602 kb on + strand at 168.870 kb on + strand at 168.870 kb on + strand at 168.870 kb on + strand at 168.870 kb on + strand at 168.870 kb on + strand at 168.871 kb on - strand at 168.871 kb on - strand at 168.871 kb on - strand at 168.902 kb on - strand at 169.001 kb on - strand at 169.001 kb on - strand at 169.002 kb on + strand at 169.002 kb on + strand at 169.002 kb on + strand at 169.003 kb on - strand at 169.006 kb on + strand at 169.006 kb on + strand at 169.064 kb on + strand at 169.065 kb on - strand at 169.563 kb on + strand at 169.564 kb on - strand at 169.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 166,384 + H281DRAFT_03131 0.55 -1.0 166,384 + -1.8 166,384 + H281DRAFT_03131 0.55 -2.4 166,385 - H281DRAFT_03131 0.56 -1.9 166,468 - H281DRAFT_03131 0.61 -0.6 166,546 - H281DRAFT_03131 0.66 +0.4 166,760 - +0.8 166,760 - H281DRAFT_03131 0.80 -2.0 166,902 + H281DRAFT_03131 0.89 -1.0 166,903 - H281DRAFT_03131 0.89 +1.5 167,141 + -1.3 167,367 + H281DRAFT_03132 0.13 -0.0 167,673 + H281DRAFT_03132 0.33 -0.2 167,674 - H281DRAFT_03132 0.34 -0.6 168,078 + H281DRAFT_03132 0.61 -0.5 168,153 + H281DRAFT_03132 0.66 -0.5 168,153 + H281DRAFT_03132 0.66 +0.3 168,351 + H281DRAFT_03132 0.79 -0.8 168,440 + H281DRAFT_03132 0.85 -0.9 168,441 - H281DRAFT_03132 0.85 +0.0 168,602 + -0.0 168,870 + +0.4 168,870 + -0.3 168,870 + -0.2 168,870 + +0.8 168,870 + -0.3 168,871 - -0.1 168,871 - +0.3 168,871 - -0.3 168,902 - -0.2 169,001 - -0.1 169,001 - +1.8 169,002 + -0.1 169,002 + -3.5 169,002 + +3.8 169,003 - -0.6 169,006 + +0.8 169,006 + -0.6 169,064 + -0.4 169,065 - +1.6 169,563 + +2.2 169,564 - +1.2 169,656 - +0.0
Or see this region's nucleotide sequence