Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03110 and H281DRAFT_03111 are separated by 16 nucleotides H281DRAFT_03111 and H281DRAFT_03112 are separated by 7 nucleotides H281DRAFT_03112 and H281DRAFT_03113 are separated by 129 nucleotides
H281DRAFT_03110: H281DRAFT_03110 - concentrative nucleoside transporter, CNT family, at 144,841 to 146,118
_03110
H281DRAFT_03111: H281DRAFT_03111 - cytidine deaminase, at 146,135 to 146,524
_03111
H281DRAFT_03112: H281DRAFT_03112 - Inosine-uridine nucleoside N-ribohydrolase, at 146,532 to 147,497
_03112
H281DRAFT_03113: H281DRAFT_03113 - 2-dehydropantoate 2-reductase, at 147,627 to 148,562
_03113
Position (kb) 146
147
148 Strain fitness (log2 ratio) -1
0
1 at 145.846 kb on + strand, within H281DRAFT_03110 at 146.107 kb on - strand at 146.302 kb on + strand, within H281DRAFT_03111 at 146.517 kb on - strand at 146.521 kb on - strand at 146.554 kb on - strand at 146.633 kb on - strand, within H281DRAFT_03112 at 147.151 kb on - strand, within H281DRAFT_03112 at 147.151 kb on - strand, within H281DRAFT_03112 at 147.258 kb on + strand, within H281DRAFT_03112 at 147.259 kb on - strand, within H281DRAFT_03112 at 147.285 kb on + strand, within H281DRAFT_03112 at 147.285 kb on + strand, within H281DRAFT_03112 at 147.286 kb on - strand, within H281DRAFT_03112 at 147.286 kb on - strand, within H281DRAFT_03112 at 147.383 kb on + strand, within H281DRAFT_03112 at 147.666 kb on + strand at 148.102 kb on + strand, within H281DRAFT_03113 at 148.246 kb on + strand, within H281DRAFT_03113 at 148.247 kb on - strand, within H281DRAFT_03113 at 148.247 kb on - strand, within H281DRAFT_03113 at 148.441 kb on + strand, within H281DRAFT_03113
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 145,846 + H281DRAFT_03110 0.79 +0.8 146,107 - -1.6 146,302 + H281DRAFT_03111 0.43 +0.2 146,517 - +0.7 146,521 - +0.8 146,554 - +0.7 146,633 - H281DRAFT_03112 0.10 +0.7 147,151 - H281DRAFT_03112 0.64 +1.0 147,151 - H281DRAFT_03112 0.64 -0.5 147,258 + H281DRAFT_03112 0.75 -0.3 147,259 - H281DRAFT_03112 0.75 +0.2 147,285 + H281DRAFT_03112 0.78 +0.6 147,285 + H281DRAFT_03112 0.78 -0.5 147,286 - H281DRAFT_03112 0.78 +0.0 147,286 - H281DRAFT_03112 0.78 +0.4 147,383 + H281DRAFT_03112 0.88 +0.8 147,666 + +0.7 148,102 + H281DRAFT_03113 0.51 +0.6 148,246 + H281DRAFT_03113 0.66 +1.1 148,247 - H281DRAFT_03113 0.66 -0.1 148,247 - H281DRAFT_03113 0.66 +0.7 148,441 + H281DRAFT_03113 0.87 -0.0
Or see this region's nucleotide sequence