Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03035

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03033 and H281DRAFT_03034 are separated by 12 nucleotidesH281DRAFT_03034 and H281DRAFT_03035 are separated by 329 nucleotidesH281DRAFT_03035 and H281DRAFT_03036 are separated by 131 nucleotidesH281DRAFT_03036 and H281DRAFT_03037 are separated by 23 nucleotides H281DRAFT_03033: H281DRAFT_03033 - xanthine dehydrogenase YagS FAD-binding subunit, at 62,934 to 63,935 _03033 H281DRAFT_03034: H281DRAFT_03034 - xanthine dehydrogenase YagT iron-sulfur-binding subunit, at 63,948 to 64,535 _03034 H281DRAFT_03035: H281DRAFT_03035 - hydroxybutyrate-dimer hydrolase, at 64,865 to 66,964 _03035 H281DRAFT_03036: H281DRAFT_03036 - hypothetical protein, at 67,096 to 67,338 _03036 H281DRAFT_03037: H281DRAFT_03037 - Exodeoxyribonuclease III (EC 3.1.11.2), at 67,362 to 68,171 _03037 Position (kb) 64 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 63.920 kb on - strandat 63.924 kb on - strandat 63.965 kb on + strandat 64.066 kb on + strand, within H281DRAFT_03034at 64.209 kb on + strand, within H281DRAFT_03034at 64.210 kb on - strand, within H281DRAFT_03034at 64.385 kb on + strand, within H281DRAFT_03034at 64.385 kb on + strand, within H281DRAFT_03034at 64.491 kb on - strandat 64.697 kb on + strandat 64.697 kb on + strandat 64.698 kb on - strandat 64.718 kb on - strandat 64.864 kb on + strandat 64.864 kb on + strandat 64.865 kb on - strandat 64.865 kb on - strandat 64.865 kb on - strandat 64.865 kb on - strandat 65.021 kb on + strandat 65.022 kb on - strandat 65.022 kb on - strandat 65.022 kb on - strandat 65.033 kb on - strandat 65.157 kb on - strand, within H281DRAFT_03035at 65.157 kb on - strand, within H281DRAFT_03035at 65.157 kb on - strand, within H281DRAFT_03035at 65.179 kb on + strand, within H281DRAFT_03035at 65.180 kb on - strand, within H281DRAFT_03035at 65.180 kb on - strand, within H281DRAFT_03035at 65.270 kb on + strand, within H281DRAFT_03035at 65.271 kb on - strand, within H281DRAFT_03035at 65.271 kb on - strand, within H281DRAFT_03035at 65.271 kb on - strand, within H281DRAFT_03035at 65.397 kb on - strand, within H281DRAFT_03035at 65.723 kb on + strand, within H281DRAFT_03035at 65.724 kb on - strand, within H281DRAFT_03035at 65.755 kb on - strand, within H281DRAFT_03035at 65.759 kb on + strand, within H281DRAFT_03035at 65.759 kb on + strand, within H281DRAFT_03035at 65.760 kb on - strand, within H281DRAFT_03035at 65.760 kb on - strand, within H281DRAFT_03035at 65.760 kb on - strand, within H281DRAFT_03035at 65.963 kb on + strand, within H281DRAFT_03035at 66.170 kb on + strand, within H281DRAFT_03035at 66.254 kb on + strand, within H281DRAFT_03035at 66.255 kb on - strand, within H281DRAFT_03035at 66.410 kb on + strand, within H281DRAFT_03035at 66.490 kb on + strand, within H281DRAFT_03035at 66.490 kb on + strand, within H281DRAFT_03035at 66.491 kb on - strand, within H281DRAFT_03035at 66.756 kb on - strandat 66.758 kb on + strandat 66.835 kb on + strandat 66.835 kb on + strandat 66.836 kb on - strandat 67.024 kb on + strandat 67.057 kb on + strandat 67.057 kb on + strandat 67.109 kb on - strandat 67.160 kb on - strand, within H281DRAFT_03036at 67.686 kb on + strand, within H281DRAFT_03037at 67.728 kb on + strand, within H281DRAFT_03037at 67.729 kb on - strand, within H281DRAFT_03037at 67.842 kb on + strand, within H281DRAFT_03037at 67.842 kb on + strand, within H281DRAFT_03037at 67.842 kb on + strand, within H281DRAFT_03037at 67.843 kb on - strand, within H281DRAFT_03037

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
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63,920 - +1.0
63,924 - +0.0
63,965 + +0.4
64,066 + H281DRAFT_03034 0.20 -0.6
64,209 + H281DRAFT_03034 0.44 +0.5
64,210 - H281DRAFT_03034 0.45 +2.0
64,385 + H281DRAFT_03034 0.74 -1.1
64,385 + H281DRAFT_03034 0.74 +0.1
64,491 - -0.0
64,697 + -0.7
64,697 + +0.4
64,698 - -0.8
64,718 - +0.3
64,864 + +0.1
64,864 + -0.1
64,865 - +0.3
64,865 - +0.5
64,865 - -0.3
64,865 - -0.0
65,021 + -1.3
65,022 - +0.7
65,022 - -0.9
65,022 - -0.7
65,033 - +1.0
65,157 - H281DRAFT_03035 0.14 -0.1
65,157 - H281DRAFT_03035 0.14 -0.3
65,157 - H281DRAFT_03035 0.14 +1.3
65,179 + H281DRAFT_03035 0.15 -0.9
65,180 - H281DRAFT_03035 0.15 -0.4
65,180 - H281DRAFT_03035 0.15 -0.7
65,270 + H281DRAFT_03035 0.19 -0.0
65,271 - H281DRAFT_03035 0.19 +0.4
65,271 - H281DRAFT_03035 0.19 -0.2
65,271 - H281DRAFT_03035 0.19 -0.4
65,397 - H281DRAFT_03035 0.25 +0.5
65,723 + H281DRAFT_03035 0.41 +0.4
65,724 - H281DRAFT_03035 0.41 -0.4
65,755 - H281DRAFT_03035 0.42 -0.1
65,759 + H281DRAFT_03035 0.43 -2.2
65,759 + H281DRAFT_03035 0.43 +0.1
65,760 - H281DRAFT_03035 0.43 -0.1
65,760 - H281DRAFT_03035 0.43 -0.1
65,760 - H281DRAFT_03035 0.43 +0.1
65,963 + H281DRAFT_03035 0.52 -0.6
66,170 + H281DRAFT_03035 0.62 -0.9
66,254 + H281DRAFT_03035 0.66 +0.0
66,255 - H281DRAFT_03035 0.66 +0.4
66,410 + H281DRAFT_03035 0.74 +0.1
66,490 + H281DRAFT_03035 0.77 +0.6
66,490 + H281DRAFT_03035 0.77 +0.2
66,491 - H281DRAFT_03035 0.77 -0.7
66,756 - -0.3
66,758 + +1.3
66,835 + -0.8
66,835 + +1.1
66,836 - -1.1
67,024 + -0.2
67,057 + +0.0
67,057 + -1.2
67,109 - +1.6
67,160 - H281DRAFT_03036 0.26 +0.3
67,686 + H281DRAFT_03037 0.40 -0.4
67,728 + H281DRAFT_03037 0.45 +0.3
67,729 - H281DRAFT_03037 0.45 -0.4
67,842 + H281DRAFT_03037 0.59 +1.7
67,842 + H281DRAFT_03037 0.59 -0.3
67,842 + H281DRAFT_03037 0.59 -0.7
67,843 - H281DRAFT_03037 0.59 +0.0

Or see this region's nucleotide sequence