Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02954 and H281DRAFT_02955 are separated by 117 nucleotides H281DRAFT_02955 and H281DRAFT_02956 are separated by 1 nucleotides H281DRAFT_02956 and H281DRAFT_02957 overlap by 4 nucleotides
H281DRAFT_02954: H281DRAFT_02954 - glyoxylase I family protein, at 569,156 to 569,569
_02954
H281DRAFT_02955: H281DRAFT_02955 - NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family, at 569,687 to 570,274
_02955
H281DRAFT_02956: H281DRAFT_02956 - transcriptional regulator, GntR family, at 570,276 to 571,010
_02956
H281DRAFT_02957: H281DRAFT_02957 - Predicted xylanase/chitin deacetylase, at 571,007 to 571,948
_02957
Position (kb) 570
571
572 Strain fitness (log2 ratio) -2
-1
0
1
2 at 569.313 kb on - strand, within H281DRAFT_02954 at 569.313 kb on - strand, within H281DRAFT_02954 at 569.313 kb on - strand, within H281DRAFT_02954 at 569.432 kb on - strand, within H281DRAFT_02954 at 569.445 kb on + strand, within H281DRAFT_02954 at 569.445 kb on + strand, within H281DRAFT_02954 at 569.467 kb on - strand, within H281DRAFT_02954 at 569.481 kb on - strand, within H281DRAFT_02954 at 569.572 kb on + strand at 569.598 kb on + strand at 569.718 kb on + strand at 569.719 kb on - strand at 570.098 kb on - strand, within H281DRAFT_02955 at 570.906 kb on - strand, within H281DRAFT_02956 at 570.943 kb on + strand at 571.156 kb on - strand, within H281DRAFT_02957 at 571.731 kb on + strand, within H281DRAFT_02957
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 569,313 - H281DRAFT_02954 0.38 -0.8 569,313 - H281DRAFT_02954 0.38 -0.5 569,313 - H281DRAFT_02954 0.38 -0.0 569,432 - H281DRAFT_02954 0.67 +2.0 569,445 + H281DRAFT_02954 0.70 +0.3 569,445 + H281DRAFT_02954 0.70 -1.8 569,467 - H281DRAFT_02954 0.75 +0.1 569,481 - H281DRAFT_02954 0.79 +0.5 569,572 + -1.5 569,598 + +0.0 569,718 + -0.5 569,719 - -0.3 570,098 - H281DRAFT_02955 0.70 +1.1 570,906 - H281DRAFT_02956 0.86 -0.3 570,943 + -0.9 571,156 - H281DRAFT_02957 0.16 +0.4 571,731 + H281DRAFT_02957 0.77 -0.1
Or see this region's nucleotide sequence