Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02574 and H281DRAFT_02575 are separated by 202 nucleotides H281DRAFT_02575 and H281DRAFT_02576 are separated by 93 nucleotides H281DRAFT_02576 and H281DRAFT_02577 are separated by 30 nucleotides
H281DRAFT_02574: H281DRAFT_02574 - Glycine/D-amino acid oxidase (deaminating), at 148,728 to 150,023
_02574
H281DRAFT_02575: H281DRAFT_02575 - D-threo-aldose 1-dehydrogenase, at 150,226 to 151,203
_02575
H281DRAFT_02576: H281DRAFT_02576 - transcriptional regulator, IclR family, at 151,297 to 152,088
_02576
H281DRAFT_02577: H281DRAFT_02577 - Sugar phosphate isomerase/epimerase, at 152,119 to 152,934
_02577
Position (kb) 150
151
152 Strain fitness (log2 ratio) -1
0
1
2 at 149.250 kb on + strand, within H281DRAFT_02574 at 149.301 kb on + strand, within H281DRAFT_02574 at 149.301 kb on + strand, within H281DRAFT_02574 at 149.599 kb on + strand, within H281DRAFT_02574 at 150.045 kb on + strand at 150.045 kb on + strand at 150.046 kb on - strand at 150.046 kb on - strand at 150.069 kb on + strand at 150.069 kb on + strand at 150.069 kb on + strand at 150.069 kb on + strand at 150.436 kb on - strand, within H281DRAFT_02575 at 150.890 kb on + strand, within H281DRAFT_02575 at 150.953 kb on + strand, within H281DRAFT_02575 at 150.977 kb on + strand, within H281DRAFT_02575 at 151.395 kb on - strand, within H281DRAFT_02576 at 151.488 kb on - strand, within H281DRAFT_02576 at 151.488 kb on - strand, within H281DRAFT_02576 at 151.939 kb on + strand at 152.120 kb on + strand at 152.157 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 149,250 + H281DRAFT_02574 0.40 +0.4 149,301 + H281DRAFT_02574 0.44 +2.3 149,301 + H281DRAFT_02574 0.44 +0.9 149,599 + H281DRAFT_02574 0.67 -1.3 150,045 + +0.1 150,045 + +0.9 150,046 - +0.1 150,046 - -0.9 150,069 + -0.7 150,069 + -0.8 150,069 + -0.3 150,069 + +0.3 150,436 - H281DRAFT_02575 0.21 +0.3 150,890 + H281DRAFT_02575 0.68 +0.3 150,953 + H281DRAFT_02575 0.74 +0.9 150,977 + H281DRAFT_02575 0.77 +1.0 151,395 - H281DRAFT_02576 0.12 -0.1 151,488 - H281DRAFT_02576 0.24 -0.4 151,488 - H281DRAFT_02576 0.24 -0.1 151,939 + +0.5 152,120 + +0.4 152,157 + +1.0
Or see this region's nucleotide sequence