Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02347 and H281DRAFT_02348 are separated by 28 nucleotides H281DRAFT_02348 and H281DRAFT_02349 are separated by 1 nucleotides H281DRAFT_02349 and H281DRAFT_02350 overlap by 23 nucleotides
H281DRAFT_02347: H281DRAFT_02347 - general secretion pathway protein L, at 505,347 to 506,747
_02347
H281DRAFT_02348: H281DRAFT_02348 - general secretion pathway protein K, at 506,776 to 507,966
_02348
H281DRAFT_02349: H281DRAFT_02349 - general secretion pathway protein J, at 507,968 to 508,645
_02349
H281DRAFT_02350: H281DRAFT_02350 - general secretion pathway protein I, at 508,623 to 509,036
_02350
Position (kb) 506
507
508 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 505.982 kb on + strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand, within H281DRAFT_02347 at 505.983 kb on - strand at 505.984 kb on + strand, within H281DRAFT_02347 at 505.984 kb on + strand, within H281DRAFT_02347 at 505.984 kb on + strand, within H281DRAFT_02347 at 505.984 kb on + strand, within H281DRAFT_02347 at 505.984 kb on + strand, within H281DRAFT_02347 at 505.984 kb on + strand, within H281DRAFT_02347 at 505.985 kb on - strand, within H281DRAFT_02347 at 506.378 kb on - strand, within H281DRAFT_02347 at 506.378 kb on - strand, within H281DRAFT_02347 at 506.378 kb on - strand, within H281DRAFT_02347 at 506.378 kb on - strand, within H281DRAFT_02347 at 506.378 kb on - strand, within H281DRAFT_02347 at 506.378 kb on - strand, within H281DRAFT_02347 at 506.378 kb on - strand, within H281DRAFT_02347 at 506.456 kb on + strand, within H281DRAFT_02347 at 506.457 kb on - strand, within H281DRAFT_02347 at 506.457 kb on - strand, within H281DRAFT_02347 at 506.457 kb on - strand, within H281DRAFT_02347 at 506.498 kb on + strand, within H281DRAFT_02347 at 506.498 kb on + strand, within H281DRAFT_02347 at 506.727 kb on + strand at 506.779 kb on + strand at 506.779 kb on + strand at 506.779 kb on + strand at 506.779 kb on + strand at 506.780 kb on - strand at 506.780 kb on - strand at 506.780 kb on - strand at 506.780 kb on - strand at 506.780 kb on - strand at 506.802 kb on + strand at 506.803 kb on - strand at 506.809 kb on - strand at 506.809 kb on - strand at 506.894 kb on + strand at 506.895 kb on - strand, within H281DRAFT_02348 at 506.895 kb on - strand, within H281DRAFT_02348 at 506.895 kb on - strand, within H281DRAFT_02348 at 506.895 kb on - strand, within H281DRAFT_02348 at 506.901 kb on + strand, within H281DRAFT_02348 at 506.901 kb on + strand, within H281DRAFT_02348 at 506.912 kb on + strand, within H281DRAFT_02348 at 506.913 kb on - strand, within H281DRAFT_02348 at 507.247 kb on - strand, within H281DRAFT_02348 at 507.416 kb on + strand, within H281DRAFT_02348 at 507.416 kb on + strand, within H281DRAFT_02348 at 507.416 kb on + strand, within H281DRAFT_02348 at 507.417 kb on - strand, within H281DRAFT_02348 at 507.524 kb on + strand, within H281DRAFT_02348 at 507.524 kb on + strand, within H281DRAFT_02348 at 507.524 kb on + strand, within H281DRAFT_02348 at 507.525 kb on - strand, within H281DRAFT_02348 at 507.623 kb on + strand, within H281DRAFT_02348 at 507.623 kb on + strand, within H281DRAFT_02348 at 507.623 kb on + strand, within H281DRAFT_02348 at 507.624 kb on - strand, within H281DRAFT_02348 at 507.624 kb on - strand, within H281DRAFT_02348 at 507.624 kb on - strand, within H281DRAFT_02348 at 507.627 kb on + strand, within H281DRAFT_02348 at 507.628 kb on - strand, within H281DRAFT_02348 at 507.628 kb on - strand, within H281DRAFT_02348 at 507.642 kb on + strand, within H281DRAFT_02348 at 507.760 kb on + strand, within H281DRAFT_02348 at 507.760 kb on + strand, within H281DRAFT_02348 at 507.761 kb on - strand, within H281DRAFT_02348 at 507.761 kb on - strand, within H281DRAFT_02348 at 507.797 kb on - strand, within H281DRAFT_02348 at 507.946 kb on - strand at 508.158 kb on + strand, within H281DRAFT_02349 at 508.158 kb on + strand, within H281DRAFT_02349 at 508.244 kb on + strand, within H281DRAFT_02349 at 508.349 kb on + strand, within H281DRAFT_02349 at 508.349 kb on + strand, within H281DRAFT_02349 at 508.349 kb on + strand, within H281DRAFT_02349 at 508.350 kb on - strand, within H281DRAFT_02349 at 508.823 kb on + strand at 508.823 kb on + strand, within H281DRAFT_02350 at 508.823 kb on + strand, within H281DRAFT_02350 at 508.823 kb on + strand at 508.824 kb on - strand, within H281DRAFT_02350 at 508.824 kb on - strand, within H281DRAFT_02350 at 508.824 kb on - strand, within H281DRAFT_02350 at 508.911 kb on + strand, within H281DRAFT_02350
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 505,982 + H281DRAFT_02347 0.45 -1.4 505,983 - H281DRAFT_02347 0.45 -1.2 505,983 - H281DRAFT_02347 0.45 +0.4 505,983 - H281DRAFT_02347 0.45 -0.2 505,983 - H281DRAFT_02347 0.45 +0.5 505,983 - H281DRAFT_02347 0.45 +0.2 505,983 - H281DRAFT_02347 0.45 +0.4 505,983 - H281DRAFT_02347 0.45 +1.9 505,983 - H281DRAFT_02347 0.45 +2.8 505,983 - +1.6 505,984 + H281DRAFT_02347 0.45 +1.3 505,984 + H281DRAFT_02347 0.45 +0.2 505,984 + H281DRAFT_02347 0.45 +0.1 505,984 + H281DRAFT_02347 0.45 +0.2 505,984 + H281DRAFT_02347 0.45 -0.2 505,984 + H281DRAFT_02347 0.45 +0.0 505,985 - H281DRAFT_02347 0.46 -0.3 506,378 - H281DRAFT_02347 0.74 +0.9 506,378 - H281DRAFT_02347 0.74 +0.9 506,378 - H281DRAFT_02347 0.74 +0.1 506,378 - H281DRAFT_02347 0.74 +0.6 506,378 - H281DRAFT_02347 0.74 +0.1 506,378 - H281DRAFT_02347 0.74 +0.8 506,378 - H281DRAFT_02347 0.74 +0.0 506,456 + H281DRAFT_02347 0.79 +0.7 506,457 - H281DRAFT_02347 0.79 +0.6 506,457 - H281DRAFT_02347 0.79 +0.3 506,457 - H281DRAFT_02347 0.79 +1.4 506,498 + H281DRAFT_02347 0.82 -0.1 506,498 + H281DRAFT_02347 0.82 +0.8 506,727 + +0.7 506,779 + -0.4 506,779 + -1.2 506,779 + -1.8 506,779 + +2.0 506,780 - +0.7 506,780 - -0.5 506,780 - -0.3 506,780 - +0.2 506,780 - +0.2 506,802 + +0.1 506,803 - +3.9 506,809 - +0.7 506,809 - -0.5 506,894 + -0.7 506,895 - H281DRAFT_02348 0.10 -0.3 506,895 - H281DRAFT_02348 0.10 +1.3 506,895 - H281DRAFT_02348 0.10 -0.9 506,895 - H281DRAFT_02348 0.10 +0.5 506,901 + H281DRAFT_02348 0.10 -1.7 506,901 + H281DRAFT_02348 0.10 +0.2 506,912 + H281DRAFT_02348 0.11 +0.2 506,913 - H281DRAFT_02348 0.12 +0.6 507,247 - H281DRAFT_02348 0.40 +0.4 507,416 + H281DRAFT_02348 0.54 +0.1 507,416 + H281DRAFT_02348 0.54 -0.5 507,416 + H281DRAFT_02348 0.54 +0.3 507,417 - H281DRAFT_02348 0.54 -0.0 507,524 + H281DRAFT_02348 0.63 -0.0 507,524 + H281DRAFT_02348 0.63 +0.5 507,524 + H281DRAFT_02348 0.63 -1.1 507,525 - H281DRAFT_02348 0.63 -0.3 507,623 + H281DRAFT_02348 0.71 +0.3 507,623 + H281DRAFT_02348 0.71 +0.6 507,623 + H281DRAFT_02348 0.71 +0.2 507,624 - H281DRAFT_02348 0.71 +1.0 507,624 - H281DRAFT_02348 0.71 +0.5 507,624 - H281DRAFT_02348 0.71 -0.3 507,627 + H281DRAFT_02348 0.71 +1.5 507,628 - H281DRAFT_02348 0.72 +0.5 507,628 - H281DRAFT_02348 0.72 +1.2 507,642 + H281DRAFT_02348 0.73 +0.6 507,760 + H281DRAFT_02348 0.83 +0.6 507,760 + H281DRAFT_02348 0.83 +0.1 507,761 - H281DRAFT_02348 0.83 +0.7 507,761 - H281DRAFT_02348 0.83 +0.1 507,797 - H281DRAFT_02348 0.86 +0.8 507,946 - -0.8 508,158 + H281DRAFT_02349 0.28 -1.1 508,158 + H281DRAFT_02349 0.28 -0.2 508,244 + H281DRAFT_02349 0.41 +1.5 508,349 + H281DRAFT_02349 0.56 -0.7 508,349 + H281DRAFT_02349 0.56 +1.0 508,349 + H281DRAFT_02349 0.56 +0.3 508,350 - H281DRAFT_02349 0.56 +0.7 508,823 + +3.1 508,823 + H281DRAFT_02350 0.48 -0.0 508,823 + H281DRAFT_02350 0.48 +0.2 508,823 + +1.1 508,824 - H281DRAFT_02350 0.49 +0.8 508,824 - H281DRAFT_02350 0.49 +0.6 508,824 - H281DRAFT_02350 0.49 +0.2 508,911 + H281DRAFT_02350 0.70 +0.5
Or see this region's nucleotide sequence