Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02335 and H281DRAFT_02336 are separated by 37 nucleotides H281DRAFT_02336 and H281DRAFT_02337 are separated by 394 nucleotides H281DRAFT_02337 and H281DRAFT_02338 overlap by 4 nucleotides
H281DRAFT_02335: H281DRAFT_02335 - Uncharacterized conserved protein YaeQ, suppresses RfaH defect, at 492,885 to 493,529
_02335
H281DRAFT_02336: H281DRAFT_02336 - glyoxylase I family protein, at 493,567 to 493,992
_02336
H281DRAFT_02337: H281DRAFT_02337 - AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase, at 494,387 to 495,562
_02337
H281DRAFT_02338: H281DRAFT_02338 - DNA-3-methyladenine glycosylase II, at 495,559 to 496,476
_02338
Position (kb) 494
495
496 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 493.441 kb on + strand, within H281DRAFT_02335 at 493.442 kb on - strand, within H281DRAFT_02335 at 493.442 kb on - strand, within H281DRAFT_02335 at 493.442 kb on - strand, within H281DRAFT_02335 at 493.442 kb on - strand, within H281DRAFT_02335 at 493.640 kb on + strand, within H281DRAFT_02336 at 493.640 kb on + strand, within H281DRAFT_02336 at 493.640 kb on + strand, within H281DRAFT_02336 at 493.641 kb on - strand, within H281DRAFT_02336 at 493.641 kb on - strand, within H281DRAFT_02336 at 493.641 kb on - strand, within H281DRAFT_02336 at 493.641 kb on - strand, within H281DRAFT_02336 at 493.642 kb on + strand, within H281DRAFT_02336 at 493.642 kb on + strand, within H281DRAFT_02336 at 493.643 kb on - strand, within H281DRAFT_02336 at 493.919 kb on + strand, within H281DRAFT_02336 at 493.920 kb on - strand, within H281DRAFT_02336 at 493.920 kb on - strand, within H281DRAFT_02336 at 493.920 kb on - strand, within H281DRAFT_02336 at 493.920 kb on - strand, within H281DRAFT_02336 at 494.017 kb on + strand at 494.017 kb on + strand at 494.018 kb on - strand at 494.042 kb on + strand at 494.043 kb on - strand at 494.095 kb on + strand at 494.095 kb on + strand at 494.096 kb on - strand at 494.096 kb on - strand at 494.169 kb on - strand at 494.171 kb on + strand at 494.172 kb on - strand at 494.172 kb on - strand at 494.174 kb on + strand at 494.175 kb on - strand at 494.176 kb on + strand at 494.177 kb on - strand at 494.177 kb on - strand at 494.276 kb on - strand at 494.276 kb on - strand at 494.328 kb on + strand at 494.328 kb on + strand at 494.329 kb on - strand at 494.329 kb on - strand at 494.329 kb on - strand at 494.348 kb on + strand at 494.348 kb on + strand at 494.349 kb on - strand at 494.349 kb on - strand at 494.417 kb on - strand at 494.510 kb on + strand, within H281DRAFT_02337 at 494.511 kb on - strand, within H281DRAFT_02337 at 494.814 kb on - strand, within H281DRAFT_02337 at 494.814 kb on - strand, within H281DRAFT_02337 at 494.918 kb on + strand, within H281DRAFT_02337 at 494.918 kb on + strand, within H281DRAFT_02337 at 494.918 kb on + strand, within H281DRAFT_02337 at 494.961 kb on - strand, within H281DRAFT_02337 at 494.961 kb on - strand, within H281DRAFT_02337 at 495.291 kb on - strand, within H281DRAFT_02337 at 495.599 kb on - strand at 495.685 kb on + strand, within H281DRAFT_02338 at 495.953 kb on + strand, within H281DRAFT_02338 at 495.954 kb on - strand, within H281DRAFT_02338 at 495.954 kb on - strand, within H281DRAFT_02338 at 496.181 kb on + strand, within H281DRAFT_02338 at 496.182 kb on - strand, within H281DRAFT_02338 at 496.229 kb on + strand, within H281DRAFT_02338 at 496.229 kb on + strand, within H281DRAFT_02338 at 496.267 kb on + strand, within H281DRAFT_02338 at 496.268 kb on - strand, within H281DRAFT_02338 at 496.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 493,441 + H281DRAFT_02335 0.86 -0.6 493,442 - H281DRAFT_02335 0.86 -1.7 493,442 - H281DRAFT_02335 0.86 -1.2 493,442 - H281DRAFT_02335 0.86 +0.3 493,442 - H281DRAFT_02335 0.86 -0.3 493,640 + H281DRAFT_02336 0.17 +0.5 493,640 + H281DRAFT_02336 0.17 -1.1 493,640 + H281DRAFT_02336 0.17 -0.9 493,641 - H281DRAFT_02336 0.17 +2.4 493,641 - H281DRAFT_02336 0.17 -1.3 493,641 - H281DRAFT_02336 0.17 -0.4 493,641 - H281DRAFT_02336 0.17 -0.6 493,642 + H281DRAFT_02336 0.18 -0.7 493,642 + H281DRAFT_02336 0.18 +1.1 493,643 - H281DRAFT_02336 0.18 -0.9 493,919 + H281DRAFT_02336 0.83 +0.5 493,920 - H281DRAFT_02336 0.83 -1.3 493,920 - H281DRAFT_02336 0.83 +2.9 493,920 - H281DRAFT_02336 0.83 +0.4 493,920 - H281DRAFT_02336 0.83 +0.1 494,017 + +0.7 494,017 + +1.7 494,018 - -1.6 494,042 + +1.2 494,043 - +1.7 494,095 + +0.0 494,095 + +0.8 494,096 - -1.7 494,096 - +0.1 494,169 - +0.4 494,171 + -2.8 494,172 - -0.5 494,172 - +0.2 494,174 + -0.1 494,175 - -0.1 494,176 + -1.1 494,177 - -0.5 494,177 - +0.1 494,276 - +1.4 494,276 - +2.1 494,328 + -0.1 494,328 + +1.3 494,329 - +0.3 494,329 - +0.8 494,329 - +0.5 494,348 + -1.7 494,348 + -0.2 494,349 - -0.6 494,349 - +0.6 494,417 - +0.5 494,510 + H281DRAFT_02337 0.10 +0.5 494,511 - H281DRAFT_02337 0.11 +0.5 494,814 - H281DRAFT_02337 0.36 +0.4 494,814 - H281DRAFT_02337 0.36 -0.8 494,918 + H281DRAFT_02337 0.45 -0.2 494,918 + H281DRAFT_02337 0.45 +0.6 494,918 + H281DRAFT_02337 0.45 +0.3 494,961 - H281DRAFT_02337 0.49 +0.8 494,961 - H281DRAFT_02337 0.49 +0.8 495,291 - H281DRAFT_02337 0.77 -0.2 495,599 - +1.2 495,685 + H281DRAFT_02338 0.14 +0.4 495,953 + H281DRAFT_02338 0.43 +0.6 495,954 - H281DRAFT_02338 0.43 -0.3 495,954 - H281DRAFT_02338 0.43 -0.4 496,181 + H281DRAFT_02338 0.68 -1.0 496,182 - H281DRAFT_02338 0.68 -1.0 496,229 + H281DRAFT_02338 0.73 +0.6 496,229 + H281DRAFT_02338 0.73 -0.1 496,267 + H281DRAFT_02338 0.77 -2.0 496,268 - H281DRAFT_02338 0.77 -0.0 496,415 - -0.2
Or see this region's nucleotide sequence