Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02278 and H281DRAFT_02279 are separated by 209 nucleotides H281DRAFT_02279 and H281DRAFT_02280 are separated by 2 nucleotides H281DRAFT_02280 and H281DRAFT_02281 are separated by 207 nucleotides
H281DRAFT_02278: H281DRAFT_02278 - Protein of unknown function (DUF3296), at 423,363 to 424,607
_02278
H281DRAFT_02279: H281DRAFT_02279 - Protein of unknown function (DUF3987), at 424,817 to 426,265
_02279
H281DRAFT_02280: H281DRAFT_02280 - hypothetical protein, at 426,268 to 426,498
_02280
H281DRAFT_02281: H281DRAFT_02281 - hypothetical protein, at 426,706 to 427,509
_02281
Position (kb) 424
425
426
427 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 423.950 kb on - strand, within H281DRAFT_02278 at 423.982 kb on + strand, within H281DRAFT_02278 at 423.982 kb on + strand, within H281DRAFT_02278 at 423.983 kb on - strand, within H281DRAFT_02278 at 424.097 kb on - strand, within H281DRAFT_02278 at 424.460 kb on + strand, within H281DRAFT_02278 at 424.461 kb on - strand, within H281DRAFT_02278 at 424.532 kb on + strand at 424.601 kb on + strand at 424.602 kb on - strand at 424.630 kb on + strand at 424.636 kb on - strand at 424.639 kb on - strand at 424.643 kb on - strand at 424.690 kb on + strand at 424.697 kb on - strand at 424.830 kb on + strand at 424.831 kb on - strand at 424.842 kb on + strand at 424.890 kb on + strand at 425.101 kb on - strand, within H281DRAFT_02279 at 425.101 kb on - strand, within H281DRAFT_02279 at 425.281 kb on - strand, within H281DRAFT_02279 at 425.656 kb on + strand, within H281DRAFT_02279 at 425.658 kb on + strand, within H281DRAFT_02279 at 425.659 kb on - strand, within H281DRAFT_02279 at 425.659 kb on - strand, within H281DRAFT_02279 at 425.659 kb on - strand, within H281DRAFT_02279 at 425.659 kb on - strand, within H281DRAFT_02279 at 425.659 kb on - strand, within H281DRAFT_02279 at 425.868 kb on + strand, within H281DRAFT_02279 at 425.869 kb on - strand, within H281DRAFT_02279 at 425.869 kb on - strand, within H281DRAFT_02279 at 426.189 kb on + strand at 426.189 kb on + strand at 426.190 kb on - strand at 426.252 kb on + strand at 426.253 kb on - strand at 426.270 kb on - strand at 426.270 kb on - strand at 426.399 kb on - strand, within H281DRAFT_02280 at 426.461 kb on + strand, within H281DRAFT_02280 at 426.519 kb on - strand at 426.519 kb on - strand at 426.519 kb on - strand at 426.646 kb on + strand at 426.646 kb on + strand at 426.647 kb on - strand at 426.647 kb on - strand at 426.659 kb on + strand at 426.759 kb on + strand at 426.759 kb on + strand at 426.794 kb on + strand, within H281DRAFT_02281 at 426.796 kb on + strand, within H281DRAFT_02281 at 426.797 kb on - strand, within H281DRAFT_02281 at 426.797 kb on - strand, within H281DRAFT_02281 at 426.906 kb on + strand, within H281DRAFT_02281 at 426.919 kb on + strand, within H281DRAFT_02281 at 426.919 kb on + strand, within H281DRAFT_02281 at 426.920 kb on - strand, within H281DRAFT_02281 at 426.982 kb on + strand, within H281DRAFT_02281 at 426.983 kb on - strand, within H281DRAFT_02281 at 427.046 kb on - strand, within H281DRAFT_02281 at 427.078 kb on + strand, within H281DRAFT_02281 at 427.079 kb on - strand, within H281DRAFT_02281 at 427.079 kb on - strand, within H281DRAFT_02281 at 427.109 kb on + strand, within H281DRAFT_02281 at 427.109 kb on + strand, within H281DRAFT_02281 at 427.109 kb on + strand, within H281DRAFT_02281 at 427.150 kb on + strand, within H281DRAFT_02281 at 427.151 kb on - strand, within H281DRAFT_02281 at 427.212 kb on + strand, within H281DRAFT_02281 at 427.213 kb on - strand, within H281DRAFT_02281 at 427.213 kb on - strand, within H281DRAFT_02281
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 423,950 - H281DRAFT_02278 0.47 +0.3 423,982 + H281DRAFT_02278 0.50 -0.0 423,982 + H281DRAFT_02278 0.50 +0.8 423,983 - H281DRAFT_02278 0.50 -0.5 424,097 - H281DRAFT_02278 0.59 -0.4 424,460 + H281DRAFT_02278 0.88 -0.2 424,461 - H281DRAFT_02278 0.88 -0.3 424,532 + +0.8 424,601 + +1.6 424,602 - +0.3 424,630 + -0.1 424,636 - +1.5 424,639 - -0.2 424,643 - +0.8 424,690 + +0.2 424,697 - +0.6 424,830 + +0.5 424,831 - -1.1 424,842 + -1.2 424,890 + -0.6 425,101 - H281DRAFT_02279 0.20 +0.3 425,101 - H281DRAFT_02279 0.20 -2.5 425,281 - H281DRAFT_02279 0.32 -0.2 425,656 + H281DRAFT_02279 0.58 -0.3 425,658 + H281DRAFT_02279 0.58 +0.7 425,659 - H281DRAFT_02279 0.58 +0.5 425,659 - H281DRAFT_02279 0.58 +0.5 425,659 - H281DRAFT_02279 0.58 -0.0 425,659 - H281DRAFT_02279 0.58 -1.5 425,659 - H281DRAFT_02279 0.58 +0.1 425,868 + H281DRAFT_02279 0.73 +0.3 425,869 - H281DRAFT_02279 0.73 -0.5 425,869 - H281DRAFT_02279 0.73 +0.9 426,189 + +0.4 426,189 + -0.5 426,190 - -0.6 426,252 + +0.0 426,253 - -2.2 426,270 - +0.4 426,270 - +0.4 426,399 - H281DRAFT_02280 0.57 -0.2 426,461 + H281DRAFT_02280 0.84 -0.4 426,519 - -0.5 426,519 - -0.2 426,519 - -1.1 426,646 + -0.1 426,646 + +0.5 426,647 - +3.7 426,647 - -0.4 426,659 + -0.0 426,759 + +0.6 426,759 + -0.2 426,794 + H281DRAFT_02281 0.11 +1.3 426,796 + H281DRAFT_02281 0.11 -0.9 426,797 - H281DRAFT_02281 0.11 -0.7 426,797 - H281DRAFT_02281 0.11 +0.3 426,906 + H281DRAFT_02281 0.25 +2.7 426,919 + H281DRAFT_02281 0.26 -0.5 426,919 + H281DRAFT_02281 0.26 +0.4 426,920 - H281DRAFT_02281 0.27 +3.7 426,982 + H281DRAFT_02281 0.34 +0.1 426,983 - H281DRAFT_02281 0.34 +0.6 427,046 - H281DRAFT_02281 0.42 -0.5 427,078 + H281DRAFT_02281 0.46 -0.4 427,079 - H281DRAFT_02281 0.46 -0.3 427,079 - H281DRAFT_02281 0.46 -1.5 427,109 + H281DRAFT_02281 0.50 +0.0 427,109 + H281DRAFT_02281 0.50 -0.4 427,109 + H281DRAFT_02281 0.50 +0.8 427,150 + H281DRAFT_02281 0.55 -0.3 427,151 - H281DRAFT_02281 0.55 -0.3 427,212 + H281DRAFT_02281 0.63 -0.1 427,213 - H281DRAFT_02281 0.63 +1.2 427,213 - H281DRAFT_02281 0.63 -0.2
Or see this region's nucleotide sequence