Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02100 and H281DRAFT_02101 are separated by 76 nucleotides H281DRAFT_02101 and H281DRAFT_02102 are separated by 61 nucleotides H281DRAFT_02102 and H281DRAFT_02103 are separated by 4 nucleotides H281DRAFT_02103 and H281DRAFT_02104 overlap by 4 nucleotides
H281DRAFT_02100: H281DRAFT_02100 - glyoxylate/hydroxypyruvate reductase A, at 226,953 to 227,894
_02100
H281DRAFT_02101: H281DRAFT_02101 - hydroxymethylglutaryl-CoA lyase, at 227,971 to 228,897
_02101
H281DRAFT_02102: H281DRAFT_02102 - Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC, at 228,959 to 229,480
_02102
H281DRAFT_02103: H281DRAFT_02103 - hypothetical protein, at 229,485 to 229,712
_02103
H281DRAFT_02104: H281DRAFT_02104 - Acyl dehydratase, at 229,709 to 230,194
_02104
Position (kb) 227
228
229 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 227.083 kb on + strand, within H281DRAFT_02100 at 227.084 kb on - strand, within H281DRAFT_02100 at 227.260 kb on - strand, within H281DRAFT_02100 at 227.264 kb on - strand, within H281DRAFT_02100 at 227.264 kb on - strand, within H281DRAFT_02100 at 227.264 kb on - strand, within H281DRAFT_02100 at 227.283 kb on + strand, within H281DRAFT_02100 at 227.284 kb on - strand, within H281DRAFT_02100 at 227.304 kb on + strand, within H281DRAFT_02100 at 227.339 kb on - strand, within H281DRAFT_02100 at 227.339 kb on - strand, within H281DRAFT_02100 at 227.449 kb on - strand, within H281DRAFT_02100 at 227.450 kb on + strand, within H281DRAFT_02100 at 227.451 kb on - strand, within H281DRAFT_02100 at 227.451 kb on - strand, within H281DRAFT_02100 at 227.483 kb on + strand, within H281DRAFT_02100 at 227.484 kb on - strand, within H281DRAFT_02100 at 227.616 kb on + strand, within H281DRAFT_02100 at 227.616 kb on + strand, within H281DRAFT_02100 at 227.617 kb on - strand, within H281DRAFT_02100 at 227.617 kb on - strand, within H281DRAFT_02100 at 227.771 kb on + strand, within H281DRAFT_02100 at 227.772 kb on - strand, within H281DRAFT_02100 at 227.949 kb on + strand at 227.949 kb on + strand at 227.950 kb on - strand at 227.956 kb on + strand at 227.956 kb on + strand at 227.957 kb on - strand at 227.957 kb on - strand at 227.957 kb on - strand at 228.200 kb on - strand at 228.419 kb on - strand, within H281DRAFT_02101 at 228.419 kb on - strand, within H281DRAFT_02101 at 228.504 kb on + strand, within H281DRAFT_02101 at 228.604 kb on + strand, within H281DRAFT_02101 at 228.628 kb on + strand, within H281DRAFT_02101 at 228.659 kb on - strand, within H281DRAFT_02101 at 228.695 kb on - strand, within H281DRAFT_02101 at 228.739 kb on + strand, within H281DRAFT_02101 at 228.739 kb on + strand, within H281DRAFT_02101 at 228.901 kb on + strand at 228.902 kb on - strand at 228.942 kb on + strand at 229.225 kb on - strand, within H281DRAFT_02102 at 229.287 kb on - strand, within H281DRAFT_02102 at 229.287 kb on - strand, within H281DRAFT_02102 at 229.624 kb on - strand, within H281DRAFT_02103 at 229.838 kb on + strand, within H281DRAFT_02104 at 229.839 kb on - strand, within H281DRAFT_02104
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 227,083 + H281DRAFT_02100 0.14 +1.0 227,084 - H281DRAFT_02100 0.14 +0.1 227,260 - H281DRAFT_02100 0.33 +0.3 227,264 - H281DRAFT_02100 0.33 -0.6 227,264 - H281DRAFT_02100 0.33 +0.1 227,264 - H281DRAFT_02100 0.33 -0.7 227,283 + H281DRAFT_02100 0.35 -1.3 227,284 - H281DRAFT_02100 0.35 -1.0 227,304 + H281DRAFT_02100 0.37 +0.6 227,339 - H281DRAFT_02100 0.41 -0.3 227,339 - H281DRAFT_02100 0.41 -0.2 227,449 - H281DRAFT_02100 0.53 -0.8 227,450 + H281DRAFT_02100 0.53 -0.8 227,451 - H281DRAFT_02100 0.53 +0.5 227,451 - H281DRAFT_02100 0.53 +0.1 227,483 + H281DRAFT_02100 0.56 -2.0 227,484 - H281DRAFT_02100 0.56 -1.3 227,616 + H281DRAFT_02100 0.70 +0.3 227,616 + H281DRAFT_02100 0.70 +0.3 227,617 - H281DRAFT_02100 0.70 -0.3 227,617 - H281DRAFT_02100 0.70 -0.5 227,771 + H281DRAFT_02100 0.87 -0.3 227,772 - H281DRAFT_02100 0.87 +0.4 227,949 + -0.4 227,949 + -1.0 227,950 - +0.7 227,956 + +0.8 227,956 + -0.4 227,957 - -0.4 227,957 - -2.5 227,957 - -2.4 228,200 - +0.0 228,419 - H281DRAFT_02101 0.48 +0.1 228,419 - H281DRAFT_02101 0.48 +2.5 228,504 + H281DRAFT_02101 0.57 -1.0 228,604 + H281DRAFT_02101 0.68 +1.0 228,628 + H281DRAFT_02101 0.71 +0.2 228,659 - H281DRAFT_02101 0.74 -0.2 228,695 - H281DRAFT_02101 0.78 +0.5 228,739 + H281DRAFT_02101 0.83 +0.3 228,739 + H281DRAFT_02101 0.83 -0.6 228,901 + -0.3 228,902 - -1.0 228,942 + +2.1 229,225 - H281DRAFT_02102 0.51 -0.5 229,287 - H281DRAFT_02102 0.63 -2.1 229,287 - H281DRAFT_02102 0.63 -0.6 229,624 - H281DRAFT_02103 0.61 +3.5 229,838 + H281DRAFT_02104 0.27 +0.3 229,839 - H281DRAFT_02104 0.27 +0.9
Or see this region's nucleotide sequence