Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02043 and H281DRAFT_02044 are separated by 162 nucleotides H281DRAFT_02044 and H281DRAFT_02045 are separated by 317 nucleotides
H281DRAFT_02043: H281DRAFT_02043 - putative spermidine/putrescine transport system substrate-binding protein, at 166,521 to 167,633
_02043
H281DRAFT_02044: H281DRAFT_02044 - glycerophosphoryl diester phosphodiesterase, at 167,796 to 168,560
_02044
H281DRAFT_02045: H281DRAFT_02045 - transcriptional regulator, DeoR family, at 168,878 to 169,648
_02045
Position (kb) 167
168
169 Strain fitness (log2 ratio) -1
0
1
2
3 at 166.807 kb on + strand, within H281DRAFT_02043 at 166.807 kb on + strand, within H281DRAFT_02043 at 166.807 kb on + strand, within H281DRAFT_02043 at 166.808 kb on - strand, within H281DRAFT_02043 at 166.808 kb on - strand at 166.808 kb on - strand, within H281DRAFT_02043 at 166.894 kb on + strand, within H281DRAFT_02043 at 166.895 kb on - strand, within H281DRAFT_02043 at 167.119 kb on + strand, within H281DRAFT_02043 at 167.120 kb on - strand, within H281DRAFT_02043 at 167.203 kb on + strand, within H281DRAFT_02043 at 167.204 kb on - strand, within H281DRAFT_02043 at 167.204 kb on - strand, within H281DRAFT_02043 at 167.213 kb on - strand, within H281DRAFT_02043 at 167.262 kb on - strand, within H281DRAFT_02043 at 167.262 kb on - strand, within H281DRAFT_02043 at 167.271 kb on - strand, within H281DRAFT_02043 at 167.271 kb on - strand, within H281DRAFT_02043 at 167.271 kb on - strand, within H281DRAFT_02043 at 167.434 kb on + strand, within H281DRAFT_02043 at 167.435 kb on - strand, within H281DRAFT_02043 at 167.435 kb on - strand, within H281DRAFT_02043 at 167.502 kb on - strand, within H281DRAFT_02043 at 167.502 kb on - strand, within H281DRAFT_02043 at 167.616 kb on + strand at 167.662 kb on + strand at 167.662 kb on + strand at 167.663 kb on - strand at 167.699 kb on + strand at 167.700 kb on - strand at 167.819 kb on + strand at 167.819 kb on + strand at 167.820 kb on - strand at 168.281 kb on - strand, within H281DRAFT_02044 at 168.320 kb on + strand, within H281DRAFT_02044 at 168.320 kb on + strand, within H281DRAFT_02044 at 168.321 kb on - strand, within H281DRAFT_02044 at 168.321 kb on - strand, within H281DRAFT_02044 at 168.321 kb on - strand, within H281DRAFT_02044 at 168.537 kb on + strand at 168.537 kb on + strand at 168.537 kb on + strand at 168.538 kb on - strand at 168.538 kb on - strand at 168.645 kb on - strand at 168.735 kb on + strand at 168.784 kb on + strand at 168.785 kb on - strand at 168.836 kb on + strand at 168.836 kb on + strand at 168.906 kb on + strand at 168.906 kb on + strand at 169.224 kb on + strand, within H281DRAFT_02045 at 169.224 kb on + strand, within H281DRAFT_02045 at 169.508 kb on + strand, within H281DRAFT_02045 at 169.542 kb on - strand, within H281DRAFT_02045 at 169.542 kb on - strand, within H281DRAFT_02045
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 166,807 + H281DRAFT_02043 0.26 -0.8 166,807 + H281DRAFT_02043 0.26 -0.2 166,807 + H281DRAFT_02043 0.26 +0.1 166,808 - H281DRAFT_02043 0.26 +0.2 166,808 - +3.0 166,808 - H281DRAFT_02043 0.26 +0.5 166,894 + H281DRAFT_02043 0.34 -0.1 166,895 - H281DRAFT_02043 0.34 -0.5 167,119 + H281DRAFT_02043 0.54 +0.3 167,120 - H281DRAFT_02043 0.54 -1.1 167,203 + H281DRAFT_02043 0.61 +0.7 167,204 - H281DRAFT_02043 0.61 -0.3 167,204 - H281DRAFT_02043 0.61 +0.1 167,213 - H281DRAFT_02043 0.62 +0.6 167,262 - H281DRAFT_02043 0.67 -0.2 167,262 - H281DRAFT_02043 0.67 -0.4 167,271 - H281DRAFT_02043 0.67 -0.1 167,271 - H281DRAFT_02043 0.67 -0.8 167,271 - H281DRAFT_02043 0.67 +1.8 167,434 + H281DRAFT_02043 0.82 +0.1 167,435 - H281DRAFT_02043 0.82 +0.1 167,435 - H281DRAFT_02043 0.82 +1.4 167,502 - H281DRAFT_02043 0.88 +1.7 167,502 - H281DRAFT_02043 0.88 +0.7 167,616 + +0.0 167,662 + +0.0 167,662 + +0.0 167,663 - +1.0 167,699 + +0.3 167,700 - +0.2 167,819 + +0.9 167,819 + -0.1 167,820 - +0.0 168,281 - H281DRAFT_02044 0.63 +0.4 168,320 + H281DRAFT_02044 0.68 +1.2 168,320 + H281DRAFT_02044 0.68 +1.0 168,321 - H281DRAFT_02044 0.69 +0.3 168,321 - H281DRAFT_02044 0.69 +1.3 168,321 - H281DRAFT_02044 0.69 +0.6 168,537 + +1.0 168,537 + +0.8 168,537 + -1.3 168,538 - +0.2 168,538 - -0.2 168,645 - +0.4 168,735 + -1.5 168,784 + -0.4 168,785 - +0.7 168,836 + +0.3 168,836 + -0.2 168,906 + +0.2 168,906 + +0.2 169,224 + H281DRAFT_02045 0.45 +0.4 169,224 + H281DRAFT_02045 0.45 +0.2 169,508 + H281DRAFT_02045 0.82 +0.3 169,542 - H281DRAFT_02045 0.86 +0.6 169,542 - H281DRAFT_02045 0.86 +0.0
Or see this region's nucleotide sequence