Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01917

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01916 and H281DRAFT_01917 are separated by 76 nucleotidesH281DRAFT_01917 and H281DRAFT_01918 are separated by 95 nucleotidesH281DRAFT_01918 and H281DRAFT_01919 are separated by 52 nucleotides H281DRAFT_01916: H281DRAFT_01916 - Uncharacterized iron-regulated membrane protein, at 33,616 to 34,881 _01916 H281DRAFT_01917: H281DRAFT_01917 - formyltetrahydrofolate deformylase, at 34,958 to 35,827 _01917 H281DRAFT_01918: H281DRAFT_01918 - Isopentenyldiphosphate isomerase, at 35,923 to 36,774 _01918 H281DRAFT_01919: H281DRAFT_01919 - Threonine/homoserine/homoserine lactone efflux protein, at 36,827 to 37,441 _01919 Position (kb) 34 35 36Strain fitness (log2 ratio) -2 -1 0 1 2 3at 34.027 kb on + strand, within H281DRAFT_01916at 34.027 kb on + strand, within H281DRAFT_01916at 34.027 kb on + strand, within H281DRAFT_01916at 34.028 kb on - strand, within H281DRAFT_01916at 34.039 kb on + strand, within H281DRAFT_01916at 34.040 kb on - strand, within H281DRAFT_01916at 34.040 kb on - strand, within H281DRAFT_01916at 34.161 kb on + strand, within H281DRAFT_01916at 34.161 kb on + strand, within H281DRAFT_01916at 34.161 kb on + strand, within H281DRAFT_01916at 34.161 kb on + strand, within H281DRAFT_01916at 34.162 kb on - strand, within H281DRAFT_01916at 34.162 kb on - strand, within H281DRAFT_01916at 34.204 kb on + strand, within H281DRAFT_01916at 34.480 kb on + strand, within H281DRAFT_01916at 34.480 kb on + strand, within H281DRAFT_01916at 34.480 kb on + strand, within H281DRAFT_01916at 34.480 kb on + strand, within H281DRAFT_01916at 34.481 kb on - strand, within H281DRAFT_01916at 34.481 kb on - strand, within H281DRAFT_01916at 34.483 kb on + strand, within H281DRAFT_01916at 34.505 kb on - strand, within H281DRAFT_01916at 34.520 kb on - strand, within H281DRAFT_01916at 34.570 kb on + strand, within H281DRAFT_01916at 34.571 kb on - strand, within H281DRAFT_01916at 34.923 kb on + strandat 35.148 kb on + strandat 35.806 kb on + strandat 35.876 kb on + strandat 35.876 kb on + strandat 35.876 kb on + strandat 35.877 kb on - strandat 35.925 kb on - strandat 36.146 kb on + strand, within H281DRAFT_01918at 36.150 kb on + strand, within H281DRAFT_01918at 36.150 kb on + strand, within H281DRAFT_01918at 36.150 kb on + strand, within H281DRAFT_01918at 36.197 kb on + strand, within H281DRAFT_01918at 36.197 kb on + strand, within H281DRAFT_01918at 36.197 kb on + strand, within H281DRAFT_01918at 36.197 kb on + strand, within H281DRAFT_01918at 36.197 kb on + strand, within H281DRAFT_01918at 36.198 kb on - strand, within H281DRAFT_01918at 36.198 kb on - strand, within H281DRAFT_01918at 36.398 kb on + strand, within H281DRAFT_01918at 36.398 kb on + strand, within H281DRAFT_01918at 36.399 kb on - strand, within H281DRAFT_01918at 36.404 kb on - strand, within H281DRAFT_01918at 36.470 kb on + strand, within H281DRAFT_01918at 36.471 kb on - strand, within H281DRAFT_01918at 36.471 kb on - strand, within H281DRAFT_01918at 36.509 kb on + strand, within H281DRAFT_01918at 36.510 kb on - strand, within H281DRAFT_01918at 36.510 kb on - strand, within H281DRAFT_01918at 36.643 kb on + strand, within H281DRAFT_01918

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
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34,027 + H281DRAFT_01916 0.32 +0.9
34,027 + H281DRAFT_01916 0.32 +0.3
34,027 + H281DRAFT_01916 0.32 -0.1
34,028 - H281DRAFT_01916 0.33 +0.3
34,039 + H281DRAFT_01916 0.33 +0.0
34,040 - H281DRAFT_01916 0.33 -0.6
34,040 - H281DRAFT_01916 0.33 +0.4
34,161 + H281DRAFT_01916 0.43 +0.8
34,161 + H281DRAFT_01916 0.43 +1.0
34,161 + H281DRAFT_01916 0.43 +0.0
34,161 + H281DRAFT_01916 0.43 +1.0
34,162 - H281DRAFT_01916 0.43 +0.8
34,162 - H281DRAFT_01916 0.43 +0.6
34,204 + H281DRAFT_01916 0.46 -0.7
34,480 + H281DRAFT_01916 0.68 +0.2
34,480 + H281DRAFT_01916 0.68 +0.3
34,480 + H281DRAFT_01916 0.68 -0.6
34,480 + H281DRAFT_01916 0.68 +0.4
34,481 - H281DRAFT_01916 0.68 +0.0
34,481 - H281DRAFT_01916 0.68 -0.2
34,483 + H281DRAFT_01916 0.68 -0.6
34,505 - H281DRAFT_01916 0.70 +1.8
34,520 - H281DRAFT_01916 0.71 -0.0
34,570 + H281DRAFT_01916 0.75 +0.2
34,571 - H281DRAFT_01916 0.75 +2.8
34,923 + -0.3
35,148 + -1.0
35,806 + -1.8
35,876 + -0.8
35,876 + +2.4
35,876 + -0.0
35,877 - +0.8
35,925 - -0.1
36,146 + H281DRAFT_01918 0.26 -0.3
36,150 + H281DRAFT_01918 0.27 +0.1
36,150 + H281DRAFT_01918 0.27 -0.7
36,150 + H281DRAFT_01918 0.27 -0.5
36,197 + H281DRAFT_01918 0.32 -0.3
36,197 + H281DRAFT_01918 0.32 -0.8
36,197 + H281DRAFT_01918 0.32 +0.2
36,197 + H281DRAFT_01918 0.32 +0.3
36,197 + H281DRAFT_01918 0.32 +0.1
36,198 - H281DRAFT_01918 0.32 +0.9
36,198 - H281DRAFT_01918 0.32 +0.4
36,398 + H281DRAFT_01918 0.56 -1.2
36,398 + H281DRAFT_01918 0.56 +0.4
36,399 - H281DRAFT_01918 0.56 -1.0
36,404 - H281DRAFT_01918 0.56 +1.2
36,470 + H281DRAFT_01918 0.64 +0.4
36,471 - H281DRAFT_01918 0.64 +0.2
36,471 - H281DRAFT_01918 0.64 -0.7
36,509 + H281DRAFT_01918 0.69 +0.4
36,510 - H281DRAFT_01918 0.69 +0.3
36,510 - H281DRAFT_01918 0.69 +0.7
36,643 + H281DRAFT_01918 0.85 +0.3

Or see this region's nucleotide sequence