Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01869 and H281DRAFT_01870 are separated by 114 nucleotides H281DRAFT_01870 and H281DRAFT_01871 are separated by 245 nucleotides
H281DRAFT_01869: H281DRAFT_01869 - AraC-type DNA-binding protein, at 782,529 to 783,530
_01869
H281DRAFT_01870: H281DRAFT_01870 - Uncharacterized conserved protein, DUF849 family, at 783,645 to 784,703
_01870
H281DRAFT_01871: H281DRAFT_01871 - Predicted PurR-regulated permease PerM, at 784,949 to 786,052
_01871
Position (kb) 783
784
785 Strain fitness (log2 ratio) -2
-1
0
1
2 at 782.832 kb on + strand, within H281DRAFT_01869 at 783.133 kb on - strand, within H281DRAFT_01869 at 783.243 kb on + strand, within H281DRAFT_01869 at 783.270 kb on - strand, within H281DRAFT_01869 at 783.394 kb on - strand, within H281DRAFT_01869 at 783.446 kb on + strand at 783.577 kb on - strand at 783.618 kb on + strand at 783.753 kb on + strand, within H281DRAFT_01870 at 784.006 kb on + strand, within H281DRAFT_01870 at 784.007 kb on - strand, within H281DRAFT_01870 at 784.069 kb on + strand, within H281DRAFT_01870 at 784.069 kb on + strand, within H281DRAFT_01870 at 784.070 kb on - strand, within H281DRAFT_01870 at 784.121 kb on - strand at 784.298 kb on + strand, within H281DRAFT_01870 at 784.431 kb on - strand, within H281DRAFT_01870 at 784.534 kb on - strand, within H281DRAFT_01870 at 784.678 kb on + strand at 784.679 kb on - strand at 784.814 kb on + strand at 785.096 kb on + strand, within H281DRAFT_01871 at 785.097 kb on - strand, within H281DRAFT_01871 at 785.139 kb on - strand, within H281DRAFT_01871 at 785.179 kb on + strand at 785.180 kb on - strand, within H281DRAFT_01871 at 785.182 kb on - strand, within H281DRAFT_01871 at 785.194 kb on + strand, within H281DRAFT_01871 at 785.194 kb on + strand, within H281DRAFT_01871
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 782,832 + H281DRAFT_01869 0.30 +1.5 783,133 - H281DRAFT_01869 0.60 -1.0 783,243 + H281DRAFT_01869 0.71 +0.2 783,270 - H281DRAFT_01869 0.74 +0.6 783,394 - H281DRAFT_01869 0.86 -0.2 783,446 + -0.1 783,577 - +0.2 783,618 + -0.4 783,753 + H281DRAFT_01870 0.10 +0.0 784,006 + H281DRAFT_01870 0.34 +1.1 784,007 - H281DRAFT_01870 0.34 +0.5 784,069 + H281DRAFT_01870 0.40 -0.1 784,069 + H281DRAFT_01870 0.40 -0.1 784,070 - H281DRAFT_01870 0.40 +1.0 784,121 - +1.9 784,298 + H281DRAFT_01870 0.62 +0.3 784,431 - H281DRAFT_01870 0.74 -0.4 784,534 - H281DRAFT_01870 0.84 -1.0 784,678 + +0.9 784,679 - -1.1 784,814 + -0.3 785,096 + H281DRAFT_01871 0.13 +0.5 785,097 - H281DRAFT_01871 0.13 +0.7 785,139 - H281DRAFT_01871 0.17 +0.5 785,179 + +1.9 785,180 - H281DRAFT_01871 0.21 -0.5 785,182 - H281DRAFT_01871 0.21 +0.4 785,194 + H281DRAFT_01871 0.22 -2.2 785,194 + H281DRAFT_01871 0.22 -1.7
Or see this region's nucleotide sequence