Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01865 and H281DRAFT_01866 are separated by 19 nucleotides H281DRAFT_01866 and H281DRAFT_01867 are separated by 10 nucleotides H281DRAFT_01867 and H281DRAFT_01868 are separated by 67 nucleotides
H281DRAFT_01865: H281DRAFT_01865 - hypothetical protein, at 778,333 to 778,893
_01865
H281DRAFT_01866: H281DRAFT_01866 - taurine dioxygenase, at 778,913 to 779,761
_01866
H281DRAFT_01867: H281DRAFT_01867 - NADPH2:quinone reductase, at 779,772 to 780,752
_01867
H281DRAFT_01868: H281DRAFT_01868 - Predicted arabinose efflux permease, MFS family, at 780,820 to 782,142
_01868
Position (kb) 779
780
781 Strain fitness (log2 ratio) -2
-1
0
1
2 at 778.797 kb on + strand, within H281DRAFT_01865 at 778.797 kb on + strand, within H281DRAFT_01865 at 778.915 kb on - strand at 779.148 kb on + strand, within H281DRAFT_01866 at 779.148 kb on + strand, within H281DRAFT_01866 at 779.149 kb on - strand, within H281DRAFT_01866 at 779.515 kb on - strand, within H281DRAFT_01866 at 779.549 kb on - strand, within H281DRAFT_01866 at 779.597 kb on + strand, within H281DRAFT_01866 at 779.877 kb on - strand, within H281DRAFT_01867 at 779.901 kb on + strand, within H281DRAFT_01867 at 779.945 kb on - strand, within H281DRAFT_01867 at 780.180 kb on - strand, within H281DRAFT_01867 at 780.462 kb on - strand, within H281DRAFT_01867 at 780.700 kb on + strand at 780.746 kb on + strand at 780.746 kb on + strand at 781.048 kb on - strand, within H281DRAFT_01868 at 781.321 kb on - strand, within H281DRAFT_01868 at 781.717 kb on + strand, within H281DRAFT_01868
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 778,797 + H281DRAFT_01865 0.83 -0.4 778,797 + H281DRAFT_01865 0.83 +0.1 778,915 - +0.6 779,148 + H281DRAFT_01866 0.28 -0.6 779,148 + H281DRAFT_01866 0.28 -0.8 779,149 - H281DRAFT_01866 0.28 -0.6 779,515 - H281DRAFT_01866 0.71 +1.6 779,549 - H281DRAFT_01866 0.75 +0.6 779,597 + H281DRAFT_01866 0.81 +0.4 779,877 - H281DRAFT_01867 0.11 -0.9 779,901 + H281DRAFT_01867 0.13 -0.0 779,945 - H281DRAFT_01867 0.18 -0.8 780,180 - H281DRAFT_01867 0.42 -0.2 780,462 - H281DRAFT_01867 0.70 +2.0 780,700 + -0.4 780,746 + +0.1 780,746 + +2.2 781,048 - H281DRAFT_01868 0.17 -0.3 781,321 - H281DRAFT_01868 0.38 -0.4 781,717 + H281DRAFT_01868 0.68 -2.1
Or see this region's nucleotide sequence