Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01858

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01857 and H281DRAFT_01858 are separated by 288 nucleotidesH281DRAFT_01858 and H281DRAFT_01859 are separated by 128 nucleotides H281DRAFT_01857: H281DRAFT_01857 - hypothetical protein, at 771,214 to 771,471 _01857 H281DRAFT_01858: H281DRAFT_01858 - hypothetical protein, at 771,760 to 772,068 _01858 H281DRAFT_01859: H281DRAFT_01859 - Protein of unknown function (DUF3300), at 772,197 to 773,582 _01859 Position (kb) 771 772 773Strain fitness (log2 ratio) -1 0 1at 770.918 kb on - strandat 770.924 kb on + strandat 771.058 kb on + strandat 771.360 kb on + strand, within H281DRAFT_01857at 772.124 kb on - strandat 772.755 kb on + strand, within H281DRAFT_01859at 772.756 kb on - strand, within H281DRAFT_01859at 772.756 kb on - strand, within H281DRAFT_01859at 772.845 kb on + strand, within H281DRAFT_01859

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
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770,918 - -1.2
770,924 + +0.3
771,058 + -0.1
771,360 + H281DRAFT_01857 0.57 -0.6
772,124 - +0.5
772,755 + H281DRAFT_01859 0.40 +0.1
772,756 - H281DRAFT_01859 0.40 -0.6
772,756 - H281DRAFT_01859 0.40 -1.0
772,845 + H281DRAFT_01859 0.47 -0.1

Or see this region's nucleotide sequence