Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01399 and H281DRAFT_01400 are separated by 221 nucleotides H281DRAFT_01400 and H281DRAFT_01401 are separated by 94 nucleotides H281DRAFT_01401 and H281DRAFT_01402 are separated by 60 nucleotides
H281DRAFT_01399: H281DRAFT_01399 - arsenite efflux membrane protein ArsB, at 254,397 to 255,647
_01399
H281DRAFT_01400: H281DRAFT_01400 - cytochrome b561, at 255,869 to 256,429
_01400
H281DRAFT_01401: H281DRAFT_01401 - Polyisoprenoid-binding protein YceI, at 256,524 to 257,087
_01401
H281DRAFT_01402: H281DRAFT_01402 - Polyisoprenoid-binding protein YceI, at 257,148 to 257,726
_01402
Position (kb) 255
256
257 Strain fitness (log2 ratio) -2
-1
0
1
2 at 255.077 kb on - strand, within H281DRAFT_01399 at 255.154 kb on + strand, within H281DRAFT_01399 at 255.621 kb on - strand at 255.673 kb on + strand at 255.674 kb on - strand at 255.674 kb on - strand at 255.674 kb on - strand at 255.779 kb on - strand at 255.779 kb on - strand at 255.830 kb on - strand at 255.879 kb on + strand at 255.966 kb on - strand, within H281DRAFT_01400 at 256.019 kb on + strand, within H281DRAFT_01400 at 256.053 kb on + strand, within H281DRAFT_01400 at 256.209 kb on - strand, within H281DRAFT_01400 at 256.209 kb on - strand, within H281DRAFT_01400 at 256.239 kb on - strand, within H281DRAFT_01400 at 256.755 kb on + strand, within H281DRAFT_01401 at 256.822 kb on - strand, within H281DRAFT_01401
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 255,077 - H281DRAFT_01399 0.54 -0.3 255,154 + H281DRAFT_01399 0.61 +0.1 255,621 - -0.8 255,673 + -1.0 255,674 - -0.3 255,674 - +0.5 255,674 - +1.0 255,779 - -0.7 255,779 - -0.5 255,830 - -0.7 255,879 + +0.1 255,966 - H281DRAFT_01400 0.17 +1.0 256,019 + H281DRAFT_01400 0.27 +1.2 256,053 + H281DRAFT_01400 0.33 -0.3 256,209 - H281DRAFT_01400 0.61 -1.8 256,209 - H281DRAFT_01400 0.61 +0.3 256,239 - H281DRAFT_01400 0.66 -1.3 256,755 + H281DRAFT_01401 0.41 -0.7 256,822 - H281DRAFT_01401 0.53 +1.8
Or see this region's nucleotide sequence