Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01370 and H281DRAFT_01371 are separated by 278 nucleotides H281DRAFT_01371 and H281DRAFT_01372 are separated by 107 nucleotides H281DRAFT_01372 and H281DRAFT_01373 overlap by 4 nucleotides
H281DRAFT_01370: H281DRAFT_01370 - phospholipase C, at 214,203 to 215,672
_01370
H281DRAFT_01371: H281DRAFT_01371 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 215,951 to 217,294
_01371
H281DRAFT_01372: H281DRAFT_01372 - protocatechuate 4,5-dioxygenase alpha subunit (EC 1.13.11.8), at 217,402 to 217,761
_01372
H281DRAFT_01373: H281DRAFT_01373 - protocatechuate 4,5-dioxygenase beta subunit (EC 1.13.11.8), at 217,758 to 218,603
_01373
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -1
0
1 at 215.105 kb on - strand, within H281DRAFT_01370 at 215.270 kb on - strand, within H281DRAFT_01370 at 215.270 kb on - strand, within H281DRAFT_01370 at 215.270 kb on - strand, within H281DRAFT_01370 at 215.412 kb on + strand, within H281DRAFT_01370 at 215.601 kb on + strand at 215.601 kb on + strand at 215.602 kb on - strand at 216.054 kb on - strand at 216.650 kb on - strand, within H281DRAFT_01371 at 217.470 kb on - strand, within H281DRAFT_01372 at 217.514 kb on - strand, within H281DRAFT_01372 at 217.718 kb on + strand, within H281DRAFT_01372 at 217.915 kb on + strand, within H281DRAFT_01373
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 215,105 - H281DRAFT_01370 0.61 +1.1 215,270 - H281DRAFT_01370 0.73 +0.4 215,270 - H281DRAFT_01370 0.73 +1.1 215,270 - H281DRAFT_01370 0.73 -0.0 215,412 + H281DRAFT_01370 0.82 -1.3 215,601 + -0.6 215,601 + -0.1 215,602 - +0.5 216,054 - +1.1 216,650 - H281DRAFT_01371 0.52 -1.1 217,470 - H281DRAFT_01372 0.19 +0.6 217,514 - H281DRAFT_01372 0.31 -0.4 217,718 + H281DRAFT_01372 0.88 -0.1 217,915 + H281DRAFT_01373 0.19 -0.6
Or see this region's nucleotide sequence