Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01369 and H281DRAFT_01370 are separated by 45 nucleotides H281DRAFT_01370 and H281DRAFT_01371 are separated by 278 nucleotides
H281DRAFT_01369: H281DRAFT_01369 - DNA damage-inducible DNA polymerase II, at 211,791 to 214,157
_01369
H281DRAFT_01370: H281DRAFT_01370 - phospholipase C, at 214,203 to 215,672
_01370
H281DRAFT_01371: H281DRAFT_01371 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 215,951 to 217,294
_01371
Position (kb) 214
215
216 Strain fitness (log2 ratio) -2
-1
0
1 at 213.426 kb on + strand, within H281DRAFT_01369 at 213.427 kb on - strand, within H281DRAFT_01369 at 213.516 kb on - strand, within H281DRAFT_01369 at 213.663 kb on - strand, within H281DRAFT_01369 at 213.810 kb on + strand, within H281DRAFT_01369 at 213.993 kb on + strand at 213.994 kb on - strand at 214.192 kb on - strand at 214.745 kb on - strand, within H281DRAFT_01370 at 215.105 kb on - strand, within H281DRAFT_01370 at 215.270 kb on - strand, within H281DRAFT_01370 at 215.270 kb on - strand, within H281DRAFT_01370 at 215.270 kb on - strand, within H281DRAFT_01370 at 215.412 kb on + strand, within H281DRAFT_01370 at 215.601 kb on + strand at 215.601 kb on + strand at 215.602 kb on - strand at 216.054 kb on - strand at 216.650 kb on - strand, within H281DRAFT_01371
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 213,426 + H281DRAFT_01369 0.69 +0.2 213,427 - H281DRAFT_01369 0.69 -2.0 213,516 - H281DRAFT_01369 0.73 +0.1 213,663 - H281DRAFT_01369 0.79 +1.0 213,810 + H281DRAFT_01369 0.85 -2.0 213,993 + +0.9 213,994 - -1.2 214,192 - -0.6 214,745 - H281DRAFT_01370 0.37 -0.1 215,105 - H281DRAFT_01370 0.61 +1.1 215,270 - H281DRAFT_01370 0.73 +0.4 215,270 - H281DRAFT_01370 0.73 +1.1 215,270 - H281DRAFT_01370 0.73 -0.0 215,412 + H281DRAFT_01370 0.82 -1.3 215,601 + -0.6 215,601 + -0.1 215,602 - +0.5 216,054 - +1.1 216,650 - H281DRAFT_01371 0.52 -1.1
Or see this region's nucleotide sequence