Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01216 and H281DRAFT_01217 are separated by 163 nucleotides H281DRAFT_01217 and H281DRAFT_01218 are separated by 382 nucleotides H281DRAFT_01218 and H281DRAFT_01219 are separated by 66 nucleotides
H281DRAFT_01216: H281DRAFT_01216 - hypothetical protein, at 54,963 to 55,250
_01216
H281DRAFT_01217: H281DRAFT_01217 - bacterial translation initiation factor 1 (bIF-1), at 55,414 to 55,689
_01217
H281DRAFT_01218: H281DRAFT_01218 - response regulator receiver and ANTAR domain protein, at 56,072 to 56,647
_01218
H281DRAFT_01219: H281DRAFT_01219 - nitrate/nitrite transport system substrate-binding protein, at 56,714 to 57,805
_01219
Position (kb) 56
57 Strain fitness (log2 ratio) -2
-1
0
1 at 55.143 kb on + strand, within H281DRAFT_01216 at 55.143 kb on + strand, within H281DRAFT_01216 at 55.282 kb on + strand at 55.282 kb on + strand at 55.295 kb on + strand at 55.351 kb on + strand at 55.409 kb on + strand at 55.409 kb on + strand at 55.410 kb on - strand at 55.506 kb on - strand, within H281DRAFT_01217 at 55.506 kb on - strand, within H281DRAFT_01217 at 55.516 kb on + strand, within H281DRAFT_01217 at 55.516 kb on + strand, within H281DRAFT_01217 at 55.546 kb on - strand, within H281DRAFT_01217 at 56.002 kb on + strand at 56.003 kb on - strand at 56.003 kb on - strand at 56.028 kb on - strand at 56.066 kb on + strand at 56.067 kb on - strand at 56.121 kb on + strand at 56.122 kb on - strand at 56.883 kb on - strand, within H281DRAFT_01219 at 56.883 kb on - strand, within H281DRAFT_01219 at 56.895 kb on - strand, within H281DRAFT_01219 at 56.949 kb on + strand, within H281DRAFT_01219 at 56.949 kb on + strand, within H281DRAFT_01219 at 56.950 kb on - strand, within H281DRAFT_01219 at 56.950 kb on - strand, within H281DRAFT_01219 at 57.037 kb on + strand, within H281DRAFT_01219 at 57.083 kb on - strand, within H281DRAFT_01219 at 57.102 kb on - strand, within H281DRAFT_01219 at 57.105 kb on - strand, within H281DRAFT_01219 at 57.273 kb on - strand, within H281DRAFT_01219 at 57.275 kb on - strand, within H281DRAFT_01219 at 57.451 kb on + strand, within H281DRAFT_01219 at 57.633 kb on - strand, within H281DRAFT_01219
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 55,143 + H281DRAFT_01216 0.62 -0.4 55,143 + H281DRAFT_01216 0.62 -0.5 55,282 + +1.1 55,282 + -0.3 55,295 + -0.2 55,351 + -0.0 55,409 + +0.5 55,409 + -0.6 55,410 - +0.1 55,506 - H281DRAFT_01217 0.33 -1.8 55,506 - H281DRAFT_01217 0.33 +0.1 55,516 + H281DRAFT_01217 0.37 -0.2 55,516 + H281DRAFT_01217 0.37 -1.0 55,546 - H281DRAFT_01217 0.48 +0.1 56,002 + -0.7 56,003 - -0.6 56,003 - -0.3 56,028 - -1.6 56,066 + -0.1 56,067 - +0.6 56,121 + -0.3 56,122 - +0.4 56,883 - H281DRAFT_01219 0.15 +0.2 56,883 - H281DRAFT_01219 0.15 +0.5 56,895 - H281DRAFT_01219 0.17 +0.4 56,949 + H281DRAFT_01219 0.22 -0.2 56,949 + H281DRAFT_01219 0.22 -1.8 56,950 - H281DRAFT_01219 0.22 -1.6 56,950 - H281DRAFT_01219 0.22 -0.6 57,037 + H281DRAFT_01219 0.30 -0.3 57,083 - H281DRAFT_01219 0.34 -0.9 57,102 - H281DRAFT_01219 0.36 -0.4 57,105 - H281DRAFT_01219 0.36 -0.2 57,273 - H281DRAFT_01219 0.51 -0.4 57,275 - H281DRAFT_01219 0.51 +0.5 57,451 + H281DRAFT_01219 0.67 -1.2 57,633 - H281DRAFT_01219 0.84 +0.1
Or see this region's nucleotide sequence