Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00781 and H281DRAFT_00782 are separated by 79 nucleotides H281DRAFT_00782 and H281DRAFT_00783 are separated by 22 nucleotides
H281DRAFT_00781: H281DRAFT_00781 - sulfate transport system ATP-binding protein, at 867,485 to 868,543
_00781
H281DRAFT_00782: H281DRAFT_00782 - transcriptional regulator, LysR family, at 868,623 to 869,549
_00782
H281DRAFT_00783: H281DRAFT_00783 - L-asparaginase, at 869,572 to 870,657
_00783
Position (kb) 868
869
870 Strain fitness (log2 ratio) -2
-1
0
1 at 867.748 kb on + strand, within H281DRAFT_00781 at 867.916 kb on + strand, within H281DRAFT_00781 at 868.274 kb on - strand, within H281DRAFT_00781 at 868.304 kb on + strand, within H281DRAFT_00781 at 868.304 kb on + strand, within H281DRAFT_00781 at 868.308 kb on + strand, within H281DRAFT_00781 at 868.308 kb on + strand, within H281DRAFT_00781 at 868.309 kb on - strand, within H281DRAFT_00781 at 868.309 kb on - strand, within H281DRAFT_00781 at 868.361 kb on - strand, within H281DRAFT_00781 at 868.701 kb on + strand at 869.212 kb on - strand, within H281DRAFT_00782 at 869.319 kb on + strand, within H281DRAFT_00782 at 869.319 kb on + strand, within H281DRAFT_00782 at 869.320 kb on - strand, within H281DRAFT_00782 at 869.320 kb on - strand, within H281DRAFT_00782 at 869.365 kb on - strand, within H281DRAFT_00782 at 869.889 kb on + strand, within H281DRAFT_00783 at 869.890 kb on - strand, within H281DRAFT_00783 at 870.175 kb on + strand, within H281DRAFT_00783 at 870.175 kb on + strand, within H281DRAFT_00783 at 870.474 kb on - strand, within H281DRAFT_00783 at 870.506 kb on + strand, within H281DRAFT_00783 at 870.507 kb on - strand, within H281DRAFT_00783
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 867,748 + H281DRAFT_00781 0.25 +0.6 867,916 + H281DRAFT_00781 0.41 -0.3 868,274 - H281DRAFT_00781 0.75 -1.3 868,304 + H281DRAFT_00781 0.77 +0.2 868,304 + H281DRAFT_00781 0.77 -0.3 868,308 + H281DRAFT_00781 0.78 +0.9 868,308 + H281DRAFT_00781 0.78 +0.9 868,309 - H281DRAFT_00781 0.78 -0.7 868,309 - H281DRAFT_00781 0.78 +0.6 868,361 - H281DRAFT_00781 0.83 -0.3 868,701 + +0.2 869,212 - H281DRAFT_00782 0.64 -1.3 869,319 + H281DRAFT_00782 0.75 -0.4 869,319 + H281DRAFT_00782 0.75 +0.9 869,320 - H281DRAFT_00782 0.75 -0.0 869,320 - H281DRAFT_00782 0.75 +0.3 869,365 - H281DRAFT_00782 0.80 +0.1 869,889 + H281DRAFT_00783 0.29 +0.2 869,890 - H281DRAFT_00783 0.29 +0.5 870,175 + H281DRAFT_00783 0.56 -2.0 870,175 + H281DRAFT_00783 0.56 -0.6 870,474 - H281DRAFT_00783 0.83 -0.4 870,506 + H281DRAFT_00783 0.86 +0.5 870,507 - H281DRAFT_00783 0.86 -0.2
Or see this region's nucleotide sequence