Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00779

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00778 and H281DRAFT_00779 are separated by 150 nucleotidesH281DRAFT_00779 and H281DRAFT_00780 overlap by 4 nucleotides H281DRAFT_00778: H281DRAFT_00778 - sulfate transport system substrate-binding protein, at 864,358 to 865,407 _00778 H281DRAFT_00779: H281DRAFT_00779 - sulfate transport system permease protein, at 865,558 to 866,454 _00779 H281DRAFT_00780: H281DRAFT_00780 - sulfate transport system permease protein, at 866,451 to 867,485 _00780 Position (kb) 865 866 867Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 864.671 kb on - strand, within H281DRAFT_00778at 864.671 kb on - strand, within H281DRAFT_00778at 864.899 kb on - strand, within H281DRAFT_00778at 864.958 kb on + strand, within H281DRAFT_00778at 865.195 kb on + strand, within H281DRAFT_00778at 865.196 kb on - strand, within H281DRAFT_00778at 865.196 kb on - strand, within H281DRAFT_00778at 865.210 kb on + strand, within H281DRAFT_00778at 865.210 kb on + strand, within H281DRAFT_00778at 865.249 kb on + strand, within H281DRAFT_00778at 865.312 kb on + strandat 865.393 kb on + strandat 865.394 kb on - strandat 865.405 kb on + strandat 865.978 kb on - strand, within H281DRAFT_00779at 866.288 kb on - strand, within H281DRAFT_00779at 866.325 kb on - strand, within H281DRAFT_00779at 866.732 kb on + strand, within H281DRAFT_00780at 866.876 kb on + strand, within H281DRAFT_00780at 866.877 kb on - strand, within H281DRAFT_00780at 866.877 kb on - strand, within H281DRAFT_00780at 866.880 kb on + strand, within H281DRAFT_00780at 866.881 kb on - strand, within H281DRAFT_00780at 866.881 kb on - strand, within H281DRAFT_00780at 866.933 kb on + strand, within H281DRAFT_00780at 867.256 kb on - strand, within H281DRAFT_00780at 867.344 kb on + strand, within H281DRAFT_00780

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
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864,671 - H281DRAFT_00778 0.30 -0.5
864,671 - H281DRAFT_00778 0.30 +0.3
864,899 - H281DRAFT_00778 0.52 -0.7
864,958 + H281DRAFT_00778 0.57 +0.2
865,195 + H281DRAFT_00778 0.80 +0.3
865,196 - H281DRAFT_00778 0.80 -2.2
865,196 - H281DRAFT_00778 0.80 -0.5
865,210 + H281DRAFT_00778 0.81 +0.2
865,210 + H281DRAFT_00778 0.81 -0.7
865,249 + H281DRAFT_00778 0.85 -0.4
865,312 + -0.5
865,393 + +1.0
865,394 - -0.5
865,405 + -0.3
865,978 - H281DRAFT_00779 0.47 -0.4
866,288 - H281DRAFT_00779 0.81 -4.4
866,325 - H281DRAFT_00779 0.86 -2.0
866,732 + H281DRAFT_00780 0.27 +0.2
866,876 + H281DRAFT_00780 0.41 +0.6
866,877 - H281DRAFT_00780 0.41 +0.4
866,877 - H281DRAFT_00780 0.41 -0.7
866,880 + H281DRAFT_00780 0.41 -1.0
866,881 - H281DRAFT_00780 0.42 -0.1
866,881 - H281DRAFT_00780 0.42 +0.2
866,933 + H281DRAFT_00780 0.47 +0.7
867,256 - H281DRAFT_00780 0.78 +0.1
867,344 + H281DRAFT_00780 0.86 -0.0

Or see this region's nucleotide sequence