Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00699 and H281DRAFT_00700 overlap by 4 nucleotides H281DRAFT_00700 and H281DRAFT_00701 are separated by 2 nucleotides
H281DRAFT_00699: H281DRAFT_00699 - RND family efflux transporter, MFP subunit, at 781,473 to 782,552
_00699
H281DRAFT_00700: H281DRAFT_00700 - Multidrug efflux pump subunit AcrB, at 782,549 to 785,740
_00700
H281DRAFT_00701: H281DRAFT_00701 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 785,743 to 787,206
_00701
Position (kb) 782
783
784
785
786 Strain fitness (log2 ratio) -2
-1
0
1
2 at 781.603 kb on + strand, within H281DRAFT_00699 at 781.872 kb on + strand, within H281DRAFT_00699 at 782.029 kb on - strand, within H281DRAFT_00699 at 782.426 kb on + strand, within H281DRAFT_00699 at 782.426 kb on + strand, within H281DRAFT_00699 at 782.426 kb on + strand, within H281DRAFT_00699 at 782.427 kb on - strand, within H281DRAFT_00699 at 782.855 kb on + strand at 782.954 kb on + strand, within H281DRAFT_00700 at 783.004 kb on + strand, within H281DRAFT_00700 at 783.265 kb on + strand, within H281DRAFT_00700 at 783.908 kb on + strand, within H281DRAFT_00700 at 784.166 kb on + strand, within H281DRAFT_00700 at 784.837 kb on - strand, within H281DRAFT_00700 at 784.870 kb on + strand, within H281DRAFT_00700 at 785.017 kb on - strand, within H281DRAFT_00700 at 785.017 kb on - strand, within H281DRAFT_00700 at 785.017 kb on - strand, within H281DRAFT_00700 at 785.017 kb on - strand, within H281DRAFT_00700 at 785.089 kb on - strand, within H281DRAFT_00700 at 786.160 kb on + strand, within H281DRAFT_00701 at 786.160 kb on + strand, within H281DRAFT_00701 at 786.161 kb on - strand, within H281DRAFT_00701 at 786.161 kb on - strand, within H281DRAFT_00701 at 786.266 kb on - strand, within H281DRAFT_00701 at 786.266 kb on - strand, within H281DRAFT_00701
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 781,603 + H281DRAFT_00699 0.12 +0.5 781,872 + H281DRAFT_00699 0.37 +0.3 782,029 - H281DRAFT_00699 0.51 +0.6 782,426 + H281DRAFT_00699 0.88 -0.3 782,426 + H281DRAFT_00699 0.88 +0.6 782,426 + H281DRAFT_00699 0.88 -0.0 782,427 - H281DRAFT_00699 0.88 +0.2 782,855 + +0.0 782,954 + H281DRAFT_00700 0.13 +0.6 783,004 + H281DRAFT_00700 0.14 -0.7 783,265 + H281DRAFT_00700 0.22 -0.3 783,908 + H281DRAFT_00700 0.43 -2.6 784,166 + H281DRAFT_00700 0.51 +0.7 784,837 - H281DRAFT_00700 0.72 +0.3 784,870 + H281DRAFT_00700 0.73 +0.6 785,017 - H281DRAFT_00700 0.77 +1.9 785,017 - H281DRAFT_00700 0.77 -1.0 785,017 - H281DRAFT_00700 0.77 +0.5 785,017 - H281DRAFT_00700 0.77 -0.2 785,089 - H281DRAFT_00700 0.80 -1.1 786,160 + H281DRAFT_00701 0.28 -1.0 786,160 + H281DRAFT_00701 0.28 -0.5 786,161 - H281DRAFT_00701 0.29 +0.1 786,161 - H281DRAFT_00701 0.29 -0.6 786,266 - H281DRAFT_00701 0.36 -0.5 786,266 - H281DRAFT_00701 0.36 +1.2
Or see this region's nucleotide sequence