Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00230 and H281DRAFT_00231 are separated by 241 nucleotides H281DRAFT_00231 and H281DRAFT_00232 are separated by 288 nucleotides
H281DRAFT_00230: H281DRAFT_00230 - diguanylate cyclase (GGDEF) domain-containing protein, at 249,042 to 250,727
_00230
H281DRAFT_00231: H281DRAFT_00231 - hypothetical protein, at 250,969 to 251,229
_00231
H281DRAFT_00232: H281DRAFT_00232 - NitT/TauT family transport system permease protein, at 251,518 to 253,269
_00232
Position (kb) 250
251
252 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 250.198 kb on + strand, within H281DRAFT_00230 at 250.198 kb on + strand, within H281DRAFT_00230 at 250.198 kb on + strand, within H281DRAFT_00230 at 250.238 kb on - strand, within H281DRAFT_00230 at 250.387 kb on - strand, within H281DRAFT_00230 at 250.411 kb on - strand, within H281DRAFT_00230 at 250.411 kb on - strand, within H281DRAFT_00230 at 250.411 kb on - strand, within H281DRAFT_00230 at 250.549 kb on - strand, within H281DRAFT_00230 at 250.549 kb on - strand, within H281DRAFT_00230 at 250.574 kb on + strand at 250.575 kb on - strand at 250.626 kb on + strand at 250.627 kb on - strand at 250.627 kb on - strand at 250.627 kb on - strand at 250.671 kb on + strand at 250.750 kb on + strand at 250.767 kb on - strand at 250.992 kb on + strand at 251.114 kb on + strand, within H281DRAFT_00231 at 251.193 kb on + strand, within H281DRAFT_00231 at 251.193 kb on + strand, within H281DRAFT_00231 at 251.193 kb on + strand, within H281DRAFT_00231 at 251.194 kb on - strand, within H281DRAFT_00231 at 251.234 kb on + strand at 251.234 kb on + strand at 251.234 kb on + strand at 251.497 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 250,198 + H281DRAFT_00230 0.69 -0.2 250,198 + H281DRAFT_00230 0.69 +3.1 250,198 + H281DRAFT_00230 0.69 -0.3 250,238 - H281DRAFT_00230 0.71 +0.1 250,387 - H281DRAFT_00230 0.80 +0.6 250,411 - H281DRAFT_00230 0.81 +0.1 250,411 - H281DRAFT_00230 0.81 +0.5 250,411 - H281DRAFT_00230 0.81 -0.3 250,549 - H281DRAFT_00230 0.89 -0.5 250,549 - H281DRAFT_00230 0.89 -0.0 250,574 + -2.0 250,575 - -0.1 250,626 + +0.0 250,627 - +0.7 250,627 - -1.2 250,627 - -0.2 250,671 + +0.8 250,750 + +0.0 250,767 - +0.9 250,992 + +0.7 251,114 + H281DRAFT_00231 0.56 +0.2 251,193 + H281DRAFT_00231 0.86 -0.3 251,193 + H281DRAFT_00231 0.86 -0.7 251,193 + H281DRAFT_00231 0.86 -1.1 251,194 - H281DRAFT_00231 0.86 -3.2 251,234 + -0.0 251,234 + -0.2 251,234 + -1.0 251,497 + -1.1
Or see this region's nucleotide sequence