Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00217 and H281DRAFT_00218 are separated by 156 nucleotides H281DRAFT_00218 and H281DRAFT_00219 are separated by 148 nucleotides H281DRAFT_00219 and H281DRAFT_00220 are separated by 231 nucleotides
H281DRAFT_00217: H281DRAFT_00217 - hypothetical protein, at 235,564 to 236,733
_00217
H281DRAFT_00218: H281DRAFT_00218 - NAD+ synthase (glutamine-hydrolysing), at 236,890 to 238,635
_00218
H281DRAFT_00219: H281DRAFT_00219 - nitrogen regulatory protein P-II family, at 238,784 to 239,122
_00219
H281DRAFT_00220: H281DRAFT_00220 - Outer membrane protein (porin), at 239,354 to 240,475
_00220
Position (kb) 236
237
238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 235.991 kb on + strand, within H281DRAFT_00217 at 236.107 kb on + strand, within H281DRAFT_00217 at 236.107 kb on + strand, within H281DRAFT_00217 at 236.417 kb on + strand, within H281DRAFT_00217 at 236.438 kb on + strand, within H281DRAFT_00217 at 236.439 kb on - strand, within H281DRAFT_00217 at 236.469 kb on - strand, within H281DRAFT_00217 at 236.773 kb on + strand at 236.773 kb on + strand at 236.773 kb on + strand at 236.774 kb on - strand at 236.774 kb on - strand at 237.070 kb on + strand, within H281DRAFT_00218 at 237.192 kb on + strand, within H281DRAFT_00218 at 237.193 kb on - strand, within H281DRAFT_00218 at 237.193 kb on - strand, within H281DRAFT_00218 at 237.817 kb on + strand, within H281DRAFT_00218 at 237.818 kb on - strand at 238.214 kb on + strand at 238.406 kb on - strand, within H281DRAFT_00218 at 238.435 kb on + strand, within H281DRAFT_00218 at 238.435 kb on + strand, within H281DRAFT_00218 at 238.435 kb on + strand, within H281DRAFT_00218 at 238.436 kb on - strand, within H281DRAFT_00218 at 238.436 kb on - strand, within H281DRAFT_00218 at 238.531 kb on + strand at 238.532 kb on - strand at 238.533 kb on + strand at 238.728 kb on - strand at 238.919 kb on + strand, within H281DRAFT_00219 at 238.919 kb on + strand, within H281DRAFT_00219 at 238.934 kb on + strand, within H281DRAFT_00219 at 238.935 kb on - strand, within H281DRAFT_00219 at 238.935 kb on - strand, within H281DRAFT_00219 at 238.935 kb on - strand, within H281DRAFT_00219 at 239.121 kb on - strand at 239.245 kb on + strand at 239.422 kb on - strand at 239.425 kb on + strand at 239.553 kb on + strand, within H281DRAFT_00220 at 239.572 kb on - strand, within H281DRAFT_00220 at 239.613 kb on + strand, within H281DRAFT_00220 at 239.613 kb on + strand, within H281DRAFT_00220 at 239.614 kb on - strand, within H281DRAFT_00220
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 235,991 + H281DRAFT_00217 0.36 +1.2 236,107 + H281DRAFT_00217 0.46 -1.2 236,107 + H281DRAFT_00217 0.46 -0.3 236,417 + H281DRAFT_00217 0.73 +1.0 236,438 + H281DRAFT_00217 0.75 +0.0 236,439 - H281DRAFT_00217 0.75 +0.7 236,469 - H281DRAFT_00217 0.77 +1.6 236,773 + -0.2 236,773 + +0.5 236,773 + -0.2 236,774 - -0.8 236,774 - -0.1 237,070 + H281DRAFT_00218 0.10 +0.2 237,192 + H281DRAFT_00218 0.17 -1.4 237,193 - H281DRAFT_00218 0.17 -1.1 237,193 - H281DRAFT_00218 0.17 +1.7 237,817 + H281DRAFT_00218 0.53 +0.5 237,818 - -0.3 238,214 + +3.1 238,406 - H281DRAFT_00218 0.87 +1.0 238,435 + H281DRAFT_00218 0.88 -1.9 238,435 + H281DRAFT_00218 0.88 +0.0 238,435 + H281DRAFT_00218 0.88 +0.6 238,436 - H281DRAFT_00218 0.89 -0.3 238,436 - H281DRAFT_00218 0.89 +1.2 238,531 + +0.7 238,532 - -0.8 238,533 + +0.2 238,728 - -0.0 238,919 + H281DRAFT_00219 0.40 -2.8 238,919 + H281DRAFT_00219 0.40 -0.8 238,934 + H281DRAFT_00219 0.44 -1.0 238,935 - H281DRAFT_00219 0.45 -0.4 238,935 - H281DRAFT_00219 0.45 +0.3 238,935 - H281DRAFT_00219 0.45 -0.7 239,121 - +0.2 239,245 + -0.8 239,422 - -0.5 239,425 + +0.8 239,553 + H281DRAFT_00220 0.18 -1.2 239,572 - H281DRAFT_00220 0.19 -0.1 239,613 + H281DRAFT_00220 0.23 -1.7 239,613 + H281DRAFT_00220 0.23 +0.5 239,614 - H281DRAFT_00220 0.23 +0.1
Or see this region's nucleotide sequence