Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00104

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00103 and H281DRAFT_00104 are separated by 3 nucleotidesH281DRAFT_00104 and H281DRAFT_00105 overlap by 20 nucleotides H281DRAFT_00103: H281DRAFT_00103 - transcriptional regulator, LacI family, at 107,246 to 108,334 _00103 H281DRAFT_00104: H281DRAFT_00104 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 108,338 to 109,825 _00104 H281DRAFT_00105: H281DRAFT_00105 - monosaccharide ABC transporter membrane protein, CUT2 family, at 109,806 to 110,819 _00105 Position (kb) 108 109 110Strain fitness (log2 ratio) -2 -1 0 1at 107.804 kb on + strand, within H281DRAFT_00103at 107.804 kb on + strand, within H281DRAFT_00103at 107.804 kb on + strand, within H281DRAFT_00103at 107.804 kb on + strand, within H281DRAFT_00103at 107.805 kb on - strand, within H281DRAFT_00103at 107.904 kb on - strand, within H281DRAFT_00103at 107.933 kb on + strand, within H281DRAFT_00103at 107.934 kb on - strand, within H281DRAFT_00103at 108.005 kb on + strand, within H281DRAFT_00103at 108.006 kb on - strand, within H281DRAFT_00103at 108.435 kb on - strandat 108.638 kb on + strand, within H281DRAFT_00104at 108.639 kb on - strand, within H281DRAFT_00104at 108.639 kb on - strand, within H281DRAFT_00104at 108.921 kb on - strand, within H281DRAFT_00104at 109.334 kb on + strand, within H281DRAFT_00104at 109.335 kb on - strand, within H281DRAFT_00104at 109.640 kb on + strand, within H281DRAFT_00104at 109.869 kb on + strandat 109.870 kb on - strandat 110.343 kb on + strand, within H281DRAFT_00105at 110.492 kb on - strand, within H281DRAFT_00105at 110.492 kb on - strand, within H281DRAFT_00105at 110.521 kb on - strand, within H281DRAFT_00105at 110.752 kb on - strandat 110.823 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
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107,804 + H281DRAFT_00103 0.51 -1.5
107,804 + H281DRAFT_00103 0.51 +1.1
107,804 + H281DRAFT_00103 0.51 +1.6
107,804 + H281DRAFT_00103 0.51 +0.2
107,805 - H281DRAFT_00103 0.51 -0.5
107,904 - H281DRAFT_00103 0.60 +0.2
107,933 + H281DRAFT_00103 0.63 -2.2
107,934 - H281DRAFT_00103 0.63 -1.2
108,005 + H281DRAFT_00103 0.70 +0.1
108,006 - H281DRAFT_00103 0.70 -0.5
108,435 - +0.9
108,638 + H281DRAFT_00104 0.20 -1.0
108,639 - H281DRAFT_00104 0.20 -0.2
108,639 - H281DRAFT_00104 0.20 +0.6
108,921 - H281DRAFT_00104 0.39 +0.1
109,334 + H281DRAFT_00104 0.67 -0.7
109,335 - H281DRAFT_00104 0.67 -0.3
109,640 + H281DRAFT_00104 0.88 +0.3
109,869 + -0.2
109,870 - +0.2
110,343 + H281DRAFT_00105 0.53 -0.5
110,492 - H281DRAFT_00105 0.68 -1.8
110,492 - H281DRAFT_00105 0.68 -0.6
110,521 - H281DRAFT_00105 0.71 +0.2
110,752 - -0.0
110,823 + -0.3

Or see this region's nucleotide sequence