Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00001 and H281DRAFT_00002 are separated by 367 nucleotides H281DRAFT_00002 and H281DRAFT_00003 are separated by 800 nucleotides
H281DRAFT_00001: H281DRAFT_00001 - Transposase DDE domain-containing protein, at 1 to 705
_00001
H281DRAFT_00002: H281DRAFT_00002 - hypothetical protein, at 1,073 to 1,918
_00002
H281DRAFT_00003: H281DRAFT_00003 - nitronate monooxygenase, at 2,719 to 3,729
_00003
Position (kb) 1
2 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 0.829 kb on + strand at 1.033 kb on + strand at 1.033 kb on + strand at 1.034 kb on - strand at 1.034 kb on - strand at 1.069 kb on - strand at 1.080 kb on + strand at 1.122 kb on + strand at 1.122 kb on + strand at 1.123 kb on - strand at 1.123 kb on - strand at 1.123 kb on - strand at 1.123 kb on - strand at 1.599 kb on - strand, within H281DRAFT_00002 at 1.681 kb on - strand, within H281DRAFT_00002 at 1.728 kb on + strand, within H281DRAFT_00002 at 1.728 kb on + strand, within H281DRAFT_00002 at 1.728 kb on + strand, within H281DRAFT_00002 at 1.729 kb on - strand, within H281DRAFT_00002 at 1.729 kb on - strand, within H281DRAFT_00002 at 1.729 kb on - strand, within H281DRAFT_00002 at 1.820 kb on - strand, within H281DRAFT_00002 at 1.932 kb on + strand at 1.999 kb on - strand at 1.999 kb on - strand at 2.031 kb on + strand at 2.077 kb on + strand at 2.078 kb on - strand at 2.168 kb on + strand at 2.169 kb on - strand at 2.169 kb on - strand at 2.305 kb on + strand at 2.305 kb on + strand at 2.306 kb on - strand at 2.306 kb on - strand at 2.602 kb on + strand at 2.602 kb on + strand at 2.603 kb on - strand at 2.603 kb on - strand at 2.603 kb on - strand at 2.631 kb on - strand at 2.631 kb on - strand at 2.754 kb on + strand at 2.810 kb on + strand at 2.822 kb on + strand, within H281DRAFT_00003 at 2.822 kb on + strand, within H281DRAFT_00003 at 2.822 kb on + strand, within H281DRAFT_00003 at 2.828 kb on + strand, within H281DRAFT_00003 at 2.828 kb on + strand at 2.829 kb on - strand, within H281DRAFT_00003 at 2.862 kb on - strand, within H281DRAFT_00003
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 829 + -1.3 1,033 + -3.0 1,033 + -1.2 1,034 - -0.0 1,034 - +0.6 1,069 - +0.4 1,080 + +0.4 1,122 + -0.0 1,122 + -0.5 1,123 - +2.4 1,123 - -0.2 1,123 - +0.7 1,123 - +0.3 1,599 - H281DRAFT_00002 0.62 -0.7 1,681 - H281DRAFT_00002 0.72 -0.1 1,728 + H281DRAFT_00002 0.77 -0.5 1,728 + H281DRAFT_00002 0.77 +0.8 1,728 + H281DRAFT_00002 0.77 -1.4 1,729 - H281DRAFT_00002 0.78 -0.1 1,729 - H281DRAFT_00002 0.78 -0.2 1,729 - H281DRAFT_00002 0.78 +0.2 1,820 - H281DRAFT_00002 0.88 -0.6 1,932 + +0.0 1,999 - -0.4 1,999 - +0.3 2,031 + -2.1 2,077 + +0.5 2,078 - +0.9 2,168 + +0.2 2,169 - -0.1 2,169 - +1.9 2,305 + +1.1 2,305 + -0.6 2,306 - -0.1 2,306 - -0.1 2,602 + +0.0 2,602 + -0.0 2,603 - -0.0 2,603 - +1.3 2,603 - -0.8 2,631 - -3.5 2,631 - +0.5 2,754 + -0.0 2,810 + +0.5 2,822 + H281DRAFT_00003 0.10 +0.7 2,822 + H281DRAFT_00003 0.10 -1.0 2,822 + H281DRAFT_00003 0.10 -2.4 2,828 + H281DRAFT_00003 0.11 -1.1 2,828 + +1.1 2,829 - H281DRAFT_00003 0.11 +1.0 2,862 - H281DRAFT_00003 0.14 -0.3
Or see this region's nucleotide sequence