Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2020

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
2,117,151	+		Ga0059261_2018	0.66	-0.4
2,117,151	+		Ga0059261_2018	0.66	+0.4
2,117,152	-		Ga0059261_2018	0.66	-1.1
2,117,152	-		Ga0059261_2018	0.66	+0.5
2,117,152	-		Ga0059261_2018	0.66	-0.3
2,117,345	+		Ga0059261_2018	0.87	+0.2
2,117,345	+		Ga0059261_2018	0.87	+0.4
2,117,345	+		Ga0059261_2018	0.87	+0.3
2,117,346	-		Ga0059261_2018	0.87	+0.1
2,117,346	-		Ga0059261_2018	0.87	+0.0
2,117,346	-		Ga0059261_2018	0.87	-0.1
2,117,346	-		Ga0059261_2018	0.87	+0.3
2,117,346	-		Ga0059261_2018	0.87	+0.7
2,117,463	+				-3.3
2,117,463	+				-3.4
2,117,464	-				+0.7
2,117,464	-				+0.7
2,117,464	-				+0.7
2,117,464	-				+1.1
2,117,464	-				+0.0
2,117,464	-				+0.1
2,117,464	-				+0.1
2,117,464	-				+0.6
2,117,464	-				+0.8
2,117,464	-				+0.2
2,117,464	-				+0.6
2,117,464	-				+1.4
2,117,464	-				+1.2
2,117,465	+				-4.5
2,117,465	+				-2.2
2,117,465	+				-3.4
2,117,465	+				-0.5
2,117,465	+				+0.1
2,117,465	+				-3.0
2,117,465	+				-2.5
2,117,465	+				-1.4
2,117,465	+				-2.9
2,117,465	+				-3.2
2,117,465	+				-3.3
2,117,465	+				-3.9
2,117,465	+				-1.6
2,117,465	+				-1.8
2,117,465	+				-3.4
2,117,465	+				-3.6
2,117,465	+				-3.4
2,117,465	+				-4.7
2,117,466	-				+0.8
2,117,466	-				+0.4
2,117,466	-				+0.7
2,117,466	-				+1.0
2,117,466	-				-0.3
2,117,466	-				-0.2
2,117,466	-				+0.6
2,117,466	-				+0.6
2,117,466	-				+0.6
2,117,466	-				+0.9
2,117,466	-				+1.2
2,117,466	-				+0.2
2,117,466	-				+0.5
2,117,466	-				+0.5
2,117,466	-				+1.2
2,117,466	-				-0.2
2,117,466	-				+1.7
2,117,631	+		Ga0059261_2019	0.31	+0.8
2,117,638	-		Ga0059261_2019	0.33	+1.2
2,117,638	-		Ga0059261_2019	0.33	+1.1
2,117,638	-		Ga0059261_2019	0.33	+1.1
2,117,776	-		Ga0059261_2019	0.59	+1.3
2,117,943	+				+0.4
2,117,944	-				+0.8
2,117,944	-				+1.8
2,117,944	-				+1.7
2,117,973	+				+1.3
2,117,974	-				+0.3
2,117,974	-				+1.0
2,118,023	+				+1.1
2,118,023	+				+1.1
2,118,023	+				+0.5
2,118,023	+				+0.7
2,118,024	-				+1.2
2,118,024	-				+1.3
2,118,026	+				+1.5
2,118,026	+				+0.5
2,118,026	+				+1.3
2,118,026	+				+1.5
2,118,027	-				+0.8
2,118,056	+				+0.9
2,118,056	+				+0.9
2,118,056	+				+0.1
2,118,057	-				+0.1
2,118,057	-				+1.1
2,118,057	-				+0.8
2,118,057	-				+0.8
2,118,057	-				+0.7
2,118,164	+		Ga0059261_2020	0.14	+0.7
2,118,164	+		Ga0059261_2020	0.14	+0.5
2,118,164	+		Ga0059261_2020	0.14	+1.8
2,118,164	+		Ga0059261_2020	0.14	+0.5
2,118,164	+		Ga0059261_2020	0.14	+0.8
2,118,165	-		Ga0059261_2020	0.14	-0.1
2,118,165	-		Ga0059261_2020	0.14	+1.1
2,118,203	+		Ga0059261_2020	0.17	+1.8
2,118,203	+		Ga0059261_2020	0.17	+0.3
2,118,203	+		Ga0059261_2020	0.17	+0.9
2,118,203	+		Ga0059261_2020	0.17	+0.6
2,118,203	+		Ga0059261_2020	0.17	+0.8
2,118,204	-		Ga0059261_2020	0.17	+0.4
2,118,204	-		Ga0059261_2020	0.17	+1.0
2,118,204	-		Ga0059261_2020	0.17	+0.9
2,118,422	+		Ga0059261_2020	0.35	+0.9
2,118,428	+		Ga0059261_2020	0.36	-0.2
2,118,428	+		Ga0059261_2020	0.36	+0.7
2,118,428	+		Ga0059261_2020	0.36	+0.4
2,118,428	+		Ga0059261_2020	0.36	+0.5
2,118,429	-		Ga0059261_2020	0.36	-0.5
2,118,429	-		Ga0059261_2020	0.36	+0.5
2,118,429	-		Ga0059261_2020	0.36	+0.4
2,118,429	-		Ga0059261_2020	0.36	-0.2
2,118,429	-		Ga0059261_2020	0.36	+1.1
2,118,437	+		Ga0059261_2020	0.37	+0.1
2,118,437	+		Ga0059261_2020	0.37	+0.8
2,118,437	+		Ga0059261_2020	0.37	+0.2
2,118,438	-		Ga0059261_2020	0.37	+1.0
2,118,438	-		Ga0059261_2020	0.37	+1.2
2,118,438	-		Ga0059261_2020	0.37	+0.7
2,118,461	+		Ga0059261_2020	0.39	+0.5
2,118,461	+		Ga0059261_2020	0.39	+0.7
2,118,797	-		Ga0059261_2020	0.67	+0.5
2,118,818	+		Ga0059261_2020	0.69	+0.8
2,118,819	-		Ga0059261_2020	0.69	+0.4
2,118,819	-		Ga0059261_2020	0.69	-0.3
2,118,819	-		Ga0059261_2020	0.69	-0.2
2,118,819	-		Ga0059261_2020	0.69	+0.3
2,118,992	+		Ga0059261_2020	0.83	+1.2
2,118,993	-				+0.5
2,118,993	-		Ga0059261_2020	0.83	+0.5
2,118,993	-		Ga0059261_2020	0.83	-0.8
2,119,136	+				+2.8
2,119,136	+				-0.7
2,119,137	-				+1.1
2,119,190	+				-0.1
2,119,190	+				-0.4
2,119,191	-				+2.3
2,119,191	-				+1.0
2,119,216	-				-5.5
2,119,216	-				-1.3
2,119,263	+				-3.8
2,119,264	-				-2.2
2,119,290	+				-2.1
2,119,290	+				-2.7
2,119,290	+				-0.5
2,119,290	+				-5.2
2,119,291	-				-1.3
2,119,291	-				-2.4
2,119,291	-				-2.3
2,119,438	+		Ga0059261_2021	0.17	-4.2
2,119,438	+		Ga0059261_2021	0.17	-2.8
2,119,438	+		Ga0059261_2021	0.17	-3.3
2,119,438	+		Ga0059261_2021	0.17	-4.1
2,119,438	+		Ga0059261_2021	0.17	-3.0
2,119,438	+		Ga0059261_2021	0.17	-1.5
2,119,439	-		Ga0059261_2021	0.17	-2.8
2,119,439	-		Ga0059261_2021	0.17	-1.1
2,119,439	-		Ga0059261_2021	0.17	-1.8
2,119,440	+		Ga0059261_2021	0.17	-4.8
2,119,440	+		Ga0059261_2021	0.17	-1.5
2,119,440	+		Ga0059261_2021	0.17	-3.5
2,119,440	+		Ga0059261_2021	0.17	-1.9
2,119,440	+		Ga0059261_2021	0.17	-4.4
2,119,440	+		Ga0059261_2021	0.17	-2.1
2,119,440	+		Ga0059261_2021	0.17	-3.5
2,119,441	-		Ga0059261_2021	0.17	-2.2
2,119,441	-		Ga0059261_2021	0.17	-3.2
2,119,441	-		Ga0059261_2021	0.17	-1.9
2,119,441	-		Ga0059261_2021	0.17	-0.1
2,119,441	-		Ga0059261_2021	0.17	-2.3
2,119,441	-		Ga0059261_2021	0.17	-4.5
2,119,441	-		Ga0059261_2021	0.17	-4.0
2,119,441	-		Ga0059261_2021	0.17	-2.6
2,119,441	-		Ga0059261_2021	0.17	-1.6
2,119,473	+		Ga0059261_2021	0.19	-2.6
2,119,474	-		Ga0059261_2021	0.19	-3.9
2,119,474	-		Ga0059261_2021	0.19	-2.9
2,119,494	+		Ga0059261_2021	0.21	-2.8
2,119,494	+		Ga0059261_2021	0.21	-3.2
2,119,494	+		Ga0059261_2021	0.21	-3.1
2,119,494	+		Ga0059261_2021	0.21	-2.2
2,119,495	-		Ga0059261_2021	0.21	-3.6
2,119,500	+		Ga0059261_2021	0.21	-1.8
2,119,500	+		Ga0059261_2021	0.21	-3.4
2,119,500	+		Ga0059261_2021	0.21	-3.7
2,119,500	+		Ga0059261_2021	0.21	-2.9
2,119,500	+		Ga0059261_2021	0.21	-1.7
2,119,500	+		Ga0059261_2021	0.21	-2.9
2,119,500	+		Ga0059261_2021	0.21	-3.7
2,119,500	+		Ga0059261_2021	0.21	-3.3
2,119,500	+		Ga0059261_2021	0.21	-3.1
2,119,500	+		Ga0059261_2021	0.21	-2.7
2,119,501	-		Ga0059261_2021	0.21	-0.5
2,119,501	-		Ga0059261_2021	0.21	-0.8
2,119,501	-				-0.5
2,119,501	-		Ga0059261_2021	0.21	-4.2
2,119,698	+		Ga0059261_2021	0.35	-1.9
2,119,698	+		Ga0059261_2021	0.35	-2.8
2,119,699	-		Ga0059261_2021	0.35	-3.9
2,119,707	+				-0.5
2,119,708	-		Ga0059261_2021	0.36	-2.5
2,119,708	-		Ga0059261_2021	0.36	-1.6
2,119,953	+		Ga0059261_2021	0.53	-1.1
2,119,953	+		Ga0059261_2021	0.53	-2.8
2,119,954	-		Ga0059261_2021	0.53	-4.7
2,119,954	-		Ga0059261_2021	0.53	-3.7
2,119,991	-		Ga0059261_2021	0.56	-3.6
2,120,010	+		Ga0059261_2021	0.57	-1.3
2,120,010	+		Ga0059261_2021	0.57	-2.4
2,120,010	+		Ga0059261_2021	0.57	-3.1
2,120,010	+		Ga0059261_2021	0.57	-1.3
2,120,011	-		Ga0059261_2021	0.57	-3.0
2,120,100	+		Ga0059261_2021	0.63	-2.8
2,120,101	-		Ga0059261_2021	0.64	-4.1
2,120,101	-		Ga0059261_2021	0.64	-3.9
2,120,101	-		Ga0059261_2021	0.64	-2.0
2,120,101	-				-1.3